 |
Job Description | P0A9V8 | Confidence | 97.69% | Date | Thu Jan 5 11:11:30 GMT 2012 |
Rank | 333 | Aligned Residues | 111 |
% Identity | 20% | Template | c1gqqA_ |
PDB info |
PDB header:cell wall biosynthesis | Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; |
PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus2 influenzae
|
Resolution | 3.1 Å |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | |
. | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | |
. | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | |
. | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|  |  |  | . |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
| . |
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  | . |
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | A | A | I | A | F | I | G | L | G | Q | M | G | . |
S | P | M | A | S | N | L | L | Q | Q | G | H | Q | L | R | V | F | D | . |
V | N | A | E | A | V | R | H | L | V | D | K | G | A | T | P | A | . |
A | N | P | A | Q | A | A | K | D | A | E | F | I | I | T | M | L | P | N | G | D | L | V | R | N | V | L | F | G |
Query Conservation |   |
|   |   |
|   |
|
|
|   |
|   |
|
| . |   |   |
|
|   |   |
|   |   |   |
|   |   |
|   |   |   |
| . |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   | . |   |
|   |   |
|   |   |   |   |
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|
|
|   |
|   |   |
|   |
|   |
|   |
|
|   |   |
|   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
V | Q | Q | I | H | F | I | G | I | G | G | A | G | M | S | G | I | A | E | I | L | L | N | E | G | Y | Q | I | S | G | S | D | I | A | D | G | V | V | T | Q | R | L | A | Q | A | G | A | K | I | Y | I | G | H | A | E | E | H | I | E | G | A | S | V | V | V | V | S | S | A | I | K | D | D | N | P | E | L | V | T | S |
Template Known Secondary structure |   |
|
|  |  |  |  |  | S | T | T | S | T | T |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  | S |
|
| S |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  | S |
|
| G | G | G | G | T | T |
| S |  |  |  |  |
| S | S | S |
| T | T |
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
18 | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . |
  |
  |   |
78 | . | 80 | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . |
Predicted Secondary structure |   |
 |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | N | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | C | E | G | L | S | T | D | A | L | V | I | D | M | S | T | I | H | P | L | Q | T | D | K | L | I | A | D | M | Q | A |
Query Conservation |   |
  |   |   | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |
|
|
|
|
|   |   |   |
|   |   |
|
|   |
Template Sequence |   |
K | Q | K | R | I | P | V | I | Q | R | A | Q | M | L | A | E | I | M | R | F | R | H | G | I | A | V | A | G | T | H | G | K | T | T | T | T | A | M | I | S | M | I | Y | T |
Template Known Secondary structure |   |
 |  | T |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | S |  |  |  |  |  |  | S | S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
98 | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|