Job Description P22787 Confidence 99.59% Date Thu Jan 5 11:39:10 GMT 2012 Rank 40 Aligned Residues 256 % Identity 17% Template c1xxhB_ PDB info PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii subunit gamma; PDBTitle: atpgs bound e. coli clamp loader complex Resolution 3.45 Å

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		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210				.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																								.	.	.
Query SS confidence																								.	.	.
Query Sequence		D	L	S	D	V	I	G	Q	E	Q	G	K	R	G	L	E	I	T	A	A	G	G	.	.	.	H	N	L	L	L	I	G	P	P	G	T	G	K	T	M	L	A	S	R	I	N	G	L	L	P	D	L	S	N	E	E	A	L	E	S	A	A	I	L	S	L	V	N	A	E	S	V	Q	K	Q	W	R	Q	R	P
Query Conservation																								.	.	.
Alig confidence																								.	.	.
Template Conservation
Template Sequence		T	F	A	D	V	V	G	Q	E	H	V	L	T	A	L	A	N	G	L	S	L	G	R	I	H	H	A	Y	L	F	S	G	T	R	G	V	G	K	T	S	I	A	R	L	L	A	K	G	L	N	C	E	T	G	I	T	A	T	P	C	G	V	C	D	N	C	R	E	I	E	Q	G	R	F	V	D	L	I	E	I
Template Known Secondary structure		S	G	G	G			S														T	T				S							S	T	T	S	S													S		T	T		S		S	S			S		S									T			T	T
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	S	P	H	H	S	A	S	L	T	A	M	V	G	G	G	A	I	P	G	P	G	E	I	S	L	A	H	N	G	V	L	F	L	D	E	L	P	E	F	E	R	R	T	L	D	A	L	R	E	P	I	E	S	G	Q	I	H	L	S	R	T	R	A	K	I	T	Y	P	A	R	F	Q	L	V	A	A	M	N
Query Conservation
Alig confidence																								.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	A	A	S	R	T	K	V	E	D	T	R	D	L	L	D	N	V	Q	Y	A	P	.	.	.	A	R	G	R	F	K	V	Y	L	I	D	E	V	H	M	L	S	R	H	S	F	N	A	L	L	K	T	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	E	P	P	E	H	V	K	F	L	L	A	T	T
Template Known Secondary structure			S	S		S	T	T	T	T								T				S		.	.	.	S	S	S	S								T	G	G	G															.	.	.	.	.	.	.	.	.	.	.	.	.	S			T	T								S
Template Predicted Secondary structure																								.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.				.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.														.	.	.	.	.	150	.	.	.	.	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	P	T	G	H	Y	Q	G	N	H	N	R	C	T	P	E	Q	T	L	R	Y	L	N	R	L	S	G	P	F	L	D	R	F	D	L	S	L	E	I	P	L	P	P	P	G	I	L	S	K	T	V	V	P	G	E	S	S	A	T	V	K	Q	R	V	M	A	A	R	E	R	Q	F	K	R	Q	N	K	L	N
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	P	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	V	T	I	L	S	R	C	.	L	Q	F	H	L	K	A	L	D	V	E	Q	I	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	Q	L	E	H	I	L	N	E	E	H
Template Known Secondary structure			T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S							T	S	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.																						.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.																					.	.	.	.	.	190	.	.	.	.	.
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	L	D	S	P	E	I	R	Q	F	C	K	L	E	S	E	D	A	M	W	L	E	G	T	L	I	H	L	G	L	S	I	R	A	W	Q	R	L	L	K	V	A	R	T	I	A	D	I	D	Q	S	D	I	I	T	R	Q	H	L	Q	E	A	V	S	Y	R	A	I	D	R	L	L	I	H	L	Q	K	L	L
Query Conservation
Alig confidence																																.	.	.
Template Conservation																																.	.	.
Template Sequence		I	A	H	E	P	R	A	L	Q	L	L	A	R	A	A	E	G	S	L	R	D	A	L	S	L	T	D	Q	A	I	.	.	.	A	S	G	D	G	Q	V	S	T	Q	A	V	S	A	M	L	G	T	L	D	D	D	Q	A	L	S	L	V	E	A	M	V	E	A	N	G	E	R	V	M	A	L	I	N	E	A	A
Template Known Secondary structure				B												S		S														.	.	.				T	T		B									S			S	S		T											T	T
Template Predicted Secondary structure																																.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.				.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions