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Job DescriptionP22787
Confidence99.88%DateThu Jan 5 11:39:10 GMT 2012
Rank14Aligned Residues235
% Identity18%Templatec1qvrB_
PDB info PDB header:chaperoneChain: B: PDB Molecule:clpb protein; PDBTitle: crystal structure analysis of clpb
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  LSDVIGQEQGKRGLEIT. . . . AAGGHN. . . . . . . LLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQ
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Template Sequence  HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL. . . . . . . . . . . . . . . . . FDTEEAM
Template Known Secondary structure  TTS
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GGGTS
SSS
SBSSSSSS.................SSGGG
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   557..560.........570.........580.........590.........600.........610.. .......
 
   259260.........270.........280.........290.........300.........310.........320.........330........
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Query Sequence  KQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARF
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Template Sequence  IRIDMTEYMEKHAVSRL. . . . . . . . . QLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSH. GRTVDF. RNT
Template Known Secondary structure 
TTT

SSGGGGG
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TTT

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.TT
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   620.........630...... ...640.........650.........660.........670......... 680..... ...
 
   339340.........350.........360.........370 .........380.........390.........400.........410...
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Query Sequence  QLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNR. . . . . LSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAA
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Template Sequence  VIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQI. . . . . . . . . . RQIVEIQLSY
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   703......710.........720.........730.........740.........750.........760.. .......770..
 
   414.....420.........430.........440.........450.........460...... ...470....
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Query Sequence  RERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEGTLIHLGLSIRAWQRLLK. . VARTIADI
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Template Sequence  LRARLAEKRIS. . . . . . . . . . . . LELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK
Template Known Secondary structure  TTT
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BTTTBTST
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   773......780... ......790.........800.........810.........820...
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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