Job Description P22787 Confidence 99.85% Date Thu Jan 5 11:39:10 GMT 2012 Rank 17 Aligned Residues 239 % Identity 17% Template c1ojlF_ PDB info PDB header:response regulator Chain: F: PDB Molecule:transcriptional regulatory protein zrar; PDBTitle: crystal structure of a sigma54-activator suggests the2 mechanism for the conformational switch necessary for3 sigma54 binding Resolution 3.0 Å

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		193	.	.	.	.	.	.					200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.
Query SS confidence									.	.	.	.
Query Sequence		V	I	G	Q	E	Q	G	.	.	.	.	K	R	G	L	E	I	T	A	A	G	G	H	N	L	L	L	I	G	P	P	G	T	G	K	T	M	L	A	S	R	I	N	G	L	L	P	D	L	S	N	E	E	A	L	E	S	A	A	I	L	S	L	V	N	A	E	S	V	Q	K	Q	W	R	Q	R	P	F	R	S
Query Conservation									.	.	.	.
Alig confidence									.	.	.	.																																								.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Sequence		M	I	G	S	S	P	A	M	Q	H	L	L	N	E	I	A	M	V	A	P	S	D	A	T	V	L	I	H	G	D	S	G	T	G	K	E	L	V	A	R	A	L	H	A	C	S	A	R	S	D	.	.	.	.	.	.	R	P	L	V	T	L	N	C	A	A	L	N	E	S	L	L	E	.	.	.	.	.	.	.
Template Known Secondary structure																					S	T	T									T	T	S	S												S	S		S	S	.	.	.	.	.	.	S								T	T								.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.	.	.	.	.																		.	.	.	.	.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190							.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	H	H	S	A	S	L	T	A	M	V	G	G	G	A	I	P	G	P	G	E	I	S	L	A	H	N	G	V	L	F	L	D	E	L	P	E	F	E	R	R	T	L	D	A	L	R	E	P	I	E	S	G	Q	I	H	L	S	R	T	R	A	K	I	T	Y	P	A	R	F	Q	L	V	A	A	M	N	P	S	P
Query Conservation
Alig confidence		.	.	.																																																							.	.																				.	.
Template Conservation		.	.	.																																																							.	.																				.	.
Template Sequence		.	.	.	S	E	L	F	G	H	E	K	G	A	F	T	K	R	R	E	G	R	F	V	E	A	D	G	G	T	L	F	L	D	E	I	G	D	I	S	P	L	M	Q	V	R	L	L	R	A	I	Q	E	R	E	V	Q	R	.	.	V	G	S	N	Q	T	I	S	V	D	V	R	L	I	A	A	T	H	R	.	.
Template Known Secondary structure		.	.	.				T				S	S	S								T	T	G	G	G	T	T	S							G	G	G															S	S					.	.	S	S	S															S	S	.	.
Template Predicted Secondary structure		.	.	.																																																							.	.																				.	.
Template SS confidence
					208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	H	Y	Q	G	N	H	N	R	C	T	P	E	Q	T	L	R	Y	L	N	R	L	S	G	P	F	L	D	R	F	D	L	S	L	E	I	P	L	P	P	P	G	I	L	S	K	T	V	V	P	G	E	S	S	A	T	V	K	Q	R	V	M	A	A	R	E	R	Q	F	K	R	Q	N	K	L	N	A	W	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.																								.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.																								.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	D	L	A	E	E	V	S	A	G	R	F	R	Q	D	L	Y	Y	R	L	N	V	V	A	I	E	M	P	S	L	R	Q	R	R	.	.	.	.	.	.	.	.	.	.	E	D	I	P	L	L	A	D	H	F	L	R	R	F	A	E	R	N	R	K	V	V	K	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.									T	S	S										S								G	G	G	G	G	.	.	.	.	.	.	.	.	.	.	G	G																T	T					.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.																								.	.
Template SS confidence
														284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.											.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	P	E	I	R	Q	F	C	K	L	E	S	E	D	A	M	W	L	E	G	T	L	I	H	L	G	L	S	I	R	A	W	Q	R	L	L	K	V	A	R	T	I	A	D	I	D	Q	S	D	I	I	T	R	Q	H	L	Q	E	A	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																				.	.											.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																				.	.											.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	G	F	T	P	Q	A	M	D	L	L	I	H	Y	D	W	P	G	N	I	.	.	R	E	L	E	N	A	I	E	R	A	.	.	.	V	V	L	L	T	G	E	Y	I	S	E	R	E	L	P	L	A	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.		B														T	T			.	.											.	.	.						S	S	S	B		G	G	G	S		G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																				.	.											.	.	.
Template SS confidence
											340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.			.	360	.	.	.	.	.	.	.	.				.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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