Job Description P75737 Confidence 21.08% Date Thu Jan 5 12:13:36 GMT 2012 Rank 10 Aligned Residues 61 % Identity 23% Template c3rbbA_ PDB info PDB header:viral protein, protein binding Chain: A: PDB Molecule:protein nef; PDBTitle: hiv-1 nef protein in complex with engineered hck sh3 domain Resolution 2.35 Å

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		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	M	S	A	Q	E	K	V	G	L	N	P	G	W	Q	C	Y	T	S	F	F	M	R	V	C	Q	G	K	P	G	T	R	P	I	V	N	E	D	Y	V	S	E	S	G	F	F	G	S	M	M	H	V	G	I	I	E	L	R	R	C	Q	S	E	N	C	Q	Q	E	L	K	A	I	N	T	H
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.						.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.						.	.	.	.	.	.
Template Sequence		D	L	W	I	Y	H	T	Q	G	Y	F	P	D	W	Q	N	Y	T	P	.	.	.	.	.	.	.	.	G	P	G	I	R	.	.	.	.	.	.	Y	P	L	T	F	G	W	C	F	K	L	V	P	V	E	P	E	K	V	E	E	A	N	E	G	E	N	N	S	L	L	H	P	M	S	L	H
Template Known Secondary structure											B		S					B			.	.	.	.	.	.	.	.	S	S	S		B	.	.	.	.	.	.		B	S	S	T	T								S	S										S	T	T						G	G	G	S	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.						.	.	.	.	.	.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.									.	.	.	.	.							.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions