Phyre 2 alignment of P75737 with c1pd0A

Job Description P75737
Confidence 3.12% Date Thu Jan 5 12:13:36 GMT 2012

Rank 93 Aligned Residues 20

% Identity 35% Template c1pd0A_

PDB info PDB header:transport protein Chain: A: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the copii coat subunit, sec24,2 complexed with a peptide from the snare protein sed53 (yeast syntaxin-5)

Resolution 2.60 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	56	.	.	.	60	.	.	.	.	.						.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.
Query SS confidence											.	.	.	.	.
Query Sequence	P	F	R	C	K	T	N	C	R	G	.	.	.	.	.	D	N	L	P	D	N	T	R	R	W	Q
Query Conservation											.	.	.	.	.
Alig confidence						.					.	.	.	.	.
Template Conservation						.
Template Sequence	I	V	R	C	R	.	R	C	R	S	Y	M	N	P	F	V	T	F	I	E	Q	G	R	R	W	R
Template Known Secondary structure			B		S	.	S	S			B			T	T					T	T	T	T
Template Predicted Secondary structure						.
Template SS confidence
	228	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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