 |
Job Description | P28369 | Confidence | 3.03% | Date | Thu Jan 5 11:44:56 GMT 2012 |
Rank | 74 | Aligned Residues | 32 |
% Identity | 13% | Template | d2j9ua1 |
SCOP info | Four-helical up-and-down bundle
| VPS28 C-terminal domain-like
| VPS28 C-terminal domain-like
|
Resolution | 2.00 |
|
  |   |
41 | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | S | P | Y | R | P | H | H | G | R | K | N | W | F | L | G | I | G | R | F | T | A | D | E | Q | E | Q | S | D | A | I | R |
Query Conservation |   |
  |
|   |   |   |   |   |   |
|
|   |
|
|   |   |   |
|   |
|   |
|   |   |   |   |
|   |   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |   |
|   |
|
|   |   |
|
|   |   |
|
|   |
|   |
|   |
|
|
|   |
|
|   |   |
|
Template Sequence |   |
R | D | D | F | E | N | R | S | K | L | I | D | W | I | V | R | I | N | K | L | S | I | G | D | T | L | T | E | T | Q | I | R |
Template Known Secondary structure |   |
|
|
|
| T | T |  |  |  |  |  |  |  |  |  |  |  |  | T | S |
| T | T |
| B |
|
|  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
193 | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|