Job Description P28369 Confidence 100.00% Date Thu Jan 5 11:44:56 GMT 2012 Rank 1 Aligned Residues 162 % Identity 25% Template c3d5cX_ PDB info PDB header:ribosome Chain: X: PDB Molecule:peptide chain release factor 1; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 30s subunit, release factor 1 (rf1), two trna, and3 mrna molecules of the second 70s ribosome. the entire crystal4 structure contains two 70s ribosomes as described in remark 400. Resolution 3.21 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.					.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.
Query SS confidence																																																																			.	.	.	.
Query Sequence		M	L	E	T	E	T	G	R	Y	S	D	T	L	R	S	A	L	V	S	L	D	G	D	N	A	W	A	L	S	E	S	W	C	G	T	I	Q	W	I	C	P	S	P	Y	R	P	H	H	G	R	K	N	W	F	L	G	I	G	R	F	T	A	D	E	Q	.	.	.	.	E	Q	S	D	A	I	R	Y	E	T	L
Query Conservation																																																																			.	.	.	.
Alig confidence													.																																																						.	.	.	.
Template Conservation													.
Template Sequence		V	L	D	S	H	P	T	D	L	G	G	.	F	S	K	V	V	F	E	V	R	G	P	G	A	Y	G	T	F	K	Y	E	S	G	V	H	R	V	Q	R	V	P	V	T	E	T	Q	G	R	I	H	T	S	T	A	T	V	A	V	L	P	K	A	E	E	E	D	F	A	L	N	M	D	E	I	R	I	D	V	M
Template Known Secondary structure									T	T	S	S	.										S	T	T						G	G	G		S									S	S		S	S																									G	G	G
Template Predicted Secondary structure													.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		R	S	S	G	P	G	G	Q	H	V	N	K	T	D	S	A	V	R	A	T	H	L	A	S	G	I	S	V	K	V	Q	S	E	R	S	Q	H	A	N	K	R	L	A	R	L	L	I	A	W	K	L	E	Q	Q	Q	Q	E	N	S	A	A	L	K	S	Q	.	R	R	M	F	H	H	Q	I	E	R	G	N	P	R
Query Conservation																																																																			.
Alig confidence																																																																			.
Template Conservation
Template Sequence		R	A	S	G	P	G	G	Q	G	V	N	T	T	D	S	A	V	R	V	V	H	L	P	T	G	I	M	V	T	C	Q	D	S	R	S	Q	I	K	N	R	E	K	A	L	M	I	L	R	S	R	L	L	E	M	K	R	A	E	E	A	E	R	L	R	K	T	R	L	A	Q	I	G	T	G	E	R	S	E	K	I
Template Known Secondary structure					S																		T	T	T	T								S	S																																					S		G	G	G	G	S		S	S
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		156	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	F	T	G	M	A	F	I
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		R	T	Y	N	F	.	P	Q	S
Template Known Secondary structure						T	.	T	T	T
Template Predicted Secondary structure							.
Template SS confidence
		303	.	.	.	.		.	.	310

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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