Return to main results Retrieve Phyre Job Id

Job DescriptionP28369
Confidence11.86%DateThu Jan 5 11:44:56 GMT 2012
Rank15Aligned Residues50
% Identity18%Templatec1ztgD_
PDB info PDB header:dna, rna binding protein/dnaChain: D: PDB Molecule:poly(rc)-binding protein 1; PDBTitle: human alpha polyc binding protein kh1
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   80.........90.. .......100.........110.........120.........
Predicted Secondary structure 











..







Query SS confidence 












. .




































Query Sequence  GPGGQHVNKTDSA. . VRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQ
Query Conservation 




 



 

..


 
 



 
     


  

  

  
   
  
Alig confidence 












..




































Template Conservation 
  
  
  
   

  
 
       
 
 
 
    
  
   
   
 
Template Sequence  GKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE
Template Known Secondary structure 
TTT



SS
S
T
Template Predicted Secondary structure 













Template SS confidence 



















































   30.........40.........50.........60.........70.........80.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions