Job Description P0ACY3 Confidence 98.86% Date Thu Jan 5 11:19:25 GMT 2012 Rank 60 Aligned Residues 156 % Identity 19% Template c3u5zM_ PDB info PDB header:dna binding protein/dna Chain: M: PDB Molecule:dna polymerase accessory protein 44; PDBTitle: structure of t4 bacteriophage clamp loader bound to the t4 clamp,2 primer-template dna, and atp analog Resolution 3.50 Å

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		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	E	F	Y	G	M	E	D	A	I	E	Q	I	V	S	Y	L	K	H	A	A	Q	G	L	E	E	K	K	Q	I	L	Y	L	L	G	P	V	G	G	G	K	S	S	L	A	E	R	L	K	S	L	M	Q	L	V	P	I	Y	V	L	S	A	N	G	E	R	S	P	V	N	D	H	P	F	C	L	F	N	P
Query Conservation
Alig confidence																								.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	E	C	I	L	P	A	F	D	K	E	T	F	K	S	I	T	S	K	G	K	.	.	.	.	.	I	P	H	I	I	L	H	S	P	S	P	G	T	G	K	T	T	V	A	K	A	L	C	H	D	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	T	S																	S	S	.	.	.	.	.									S	S	S		S	S												T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.						.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	D	A	Q	I	L	E	K	E	Y	G	I	P	R	R	Y	L	G	T	I	M	S	P	W	A	A	K	R	L	H	E	F	G	G	D	I	T	K	F	R	V	V	K	V	W	P	S	I	L	Q	Q	I	A	I	A	K	T	E	P	G	D	E	N	N	Q	D	I	S	A	L	V	G	K	V	D	I	R	K	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	M	M	F	V	N	G	S	D	C	K	I	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								G	G	G				.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template SS confidence
																																																														69	70	.	.	.	.	.	.	.	.	.	80	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	Y	A	Q	N	D	P	D	A	Y	G	Y	S	G	A	L	C	R	A	N	Q	G	I	M	E	F	V	E	M	F	K	A	P	I	K	V	L	H	P	L	L	T	A	T	Q	E	G	N	Y	N	G	T	E	G	I	S	A	L	P	F	N	G	I	I	L	A	H	S	N	E	S	E	W	V	T	F	R	N	N
Query Conservation
Alig confidence		.	.																																														.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Conservation		.	.																																														.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Sequence		.	.	D	F	V	R	G	P	L	T	N	F	A	S	A	A	S	F	D	G	R	Q	K	V	I	V	I	D	E	F	D	R	S	G	L	A	E	S	Q	R	H	L	R	S	F	M	E	.	.	.	.	.	.	.	.	.	.	A	Y	S	S	N	C	S	I	I	I	T	A	N	N	I	D	.	.	.	.	.	.	.
Template Known Secondary structure		.	.					T								S			T	T										S				G	G	G													.	.	.	.	.	.	.	.	.	.		T	T	T	T								S		G	G	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.																																														.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template SS confidence
				82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.											.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	N	E	A	F	L	D	R	V	Y	I	V	K	V	P	Y	C	L	R	I	S	E	E	I	K	I	Y	E	K	L	L	N	H
Query Conservation
Alig confidence																					.
Template Conservation																					.
Template Sequence		G	I	I	K	P	L	Q	S	R	C	R	V	I	T	F	G	Q	P	T	.	D	E	D	K	I	E	M	M	K	Q	M	I	R	R
Template Known Secondary structure		G	S								S					T	T				.
Template Predicted Secondary structure																					.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions