Job Description P0ACY3 Confidence 98.82% Date Thu Jan 5 11:19:25 GMT 2012 Rank 61 Aligned Residues 226 % Identity 14% Template c2r65A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:cell division protease ftsh homolog; PDBTitle: crystal structure of helicobacter pylori atp dependent protease, ftsh2 adp complex Resolution 3.30 Å

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		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.
Query Sequence		A	F	E	E	F	Y	G	M	E	D	A	I	E	Q	I	V	S	Y	L	K	H	A	A	Q	G	.	.	.	.	.	.	L	E	E	K	K	Q	I	L	Y	L	L	G	P	V	G	G	G	K	S	S	L	A	E	R	L	K	S	L	M	Q	L	V	P	I	Y	V	L	S	A	N	G	E	R	S	P	V	N	D	H
Query Conservation																											.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	F	K	D	M	A	G	N	E	E	A	K	E	E	V	V	E	I	V	D	F	L	K	Y	P	E	R	Y	A	N	L	G	A	K	I	P	K	G	V	L	L	V	G	P	P	G	T	G	K	T	L	L	A	K	A	V	A	G	E	A	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			G	G	G	S		S							T	T									S						T	T	T					S							S	S	S	S	S													T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	C	L	F	N	P	Q	E	D	A	Q	I	L	E	K	E	Y	G	I	P	R	R	Y	L	G	T	I	M	S	P	W	A	A	K	R	L	H	E	F	G	G	D	I	T	K	F	R	V	V	K	V	W	P	S	I	L	Q	Q	I	A	I	A	K	T	E	P	G	D	E	N	N	Q	D	I	S	A	L	V	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	F	F	S	M	G	G	S	S	F	I	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	G	G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																																					229	230	.	.	.	.	.	.	.	.	.	240	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	D	I	R	K	L	E	H	Y	A	Q	N	D	P	D	A	Y	G	Y	S	G	A	L	C	R	A	N	Q	G	I	M	E	F	V	E	M	F	K	A	P	I	K	V	L	H	P	L	L	T	A	T	Q	E	G	N	Y	N	G	T	E	G	I	S	A	L	P	F	N	G	I	I	L	A	H	S	N	E	S	E
Query Conservation
Alig confidence					.	.	.	.	.	.	.																																																					.	.	.
Template Conservation					.	.	.	.	.	.	.																																																					.	.	.
Template Sequence		M	F	V	.	.	.	.	.	.	.	G	L	G	A	S	R	V	R	D	L	F	E	T	A	K	K	Q	A	P	S	I	I	F	I	D	E	I	D	A	I	G	K	N	D	E	R	E	Q	T	L	N	Q	L	L	A	E	M	D	G	F	G	S	.	.	.	E	N	A	P	V	I	V	L	A	A	T	N	R	P	E
Template Known Secondary structure				S	.	.	.	.	.	.	.	S	S		S	T	T											T		S						T	T	G	G	G	T						S	T	T	T	S	S	S					T	T			S		.	.	.	S	S	S									S		T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.																																																					.	.	.
Template SS confidence
		242	.	.								.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.				.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	V	T	F	R	N	N	K	N	N	E	A	F	L	D	R	V	Y	I	V	K	V	P	Y	C	L	R	I	S	E	E	I	K	I	Y	E	K	L	L	N	H	S	E	L	T	H	A	P	C	A	P	G	T	L	E	T	L	S	R	F	S	I	L	S	R	L	K	E	P	E	N	S	S	I	Y	S	K	M	R	V
Query Conservation
Alig confidence		.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	I	L	D	P	A	L	M	R	P	G	R	F	D	R	Q	V	L	V	D	K	P	D	F	N	G	R	V	E	I	L	K	V	H	I	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	L	A	N	D	V	N	L	Q	E	V	A	K	L
Template Known Secondary structure		.	.	.	.	.	S	S		G	G	G	G	S	T	T	S	S								S															T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S				S
Template Predicted Secondary structure		.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
							322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.																									.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	G	E	S	L	K	D	T	D	P	K	A	K	S	Y	Q	E	Y	R	D	Y	A	G	V	D	E	G	M	N	G	L	S	T	R	F	A	F	K	I	L
Query Conservation
Alig confidence					.	.	.	.
Template Conservation					.	.	.	.
Template Sequence		T	A	G	.	.	.	.	L	A	G	A	D	L	A	N	I	I	N	E	A	A	L	L	A	G	R	N	N	Q	K	E	V	R	Q	Q	H	L	K	E	A	V
Template Known Secondary structure				S	.	.	.	.			S																				S	S									S	S
Template Predicted Secondary structure					.	.	.	.
Template SS confidence
		373	.	.					.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions