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Job DescriptionP0ACY3
Confidence98.77%DateThu Jan 5 11:19:25 GMT 2012
Rank64Aligned Residues184
% Identity14%Templatec1sxjA_
PDB info PDB header:replicationChain: A: PDB Molecule:activator 1 95 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna)
Resolution2.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   75....80.........90.... .....100.........110.........120.........130.........140...
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Query Sequence  FEEFYGMEDAIEQIVSYLKH. . . . . . . . . . . AAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQLVPIYVLSANGERSP
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Template Sequence  LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ. . . . . . . . . . . . . . . . . .
Template Known Secondary structure  GGG

S
TTTT



TTSTTS
S
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   307..310.........320.........330.........340.........350.........360........
 
   144.....150.........160.........170.........180.........190.........200.........210.........220...
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Query Sequence  VNDHPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDIS
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ELGYDILEQNASDVRSKTLLN
Template Known Secondary structure  ...........................................................TT

TTS


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   369370.........380.........
 
   224.....230.........240.........250.........260.........270 .........280.........290.........300
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Query Sequence  ALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIK. . . VLHPLLTATQEGNYNGTEGISALPFNGIIL
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Template Sequence  AGVKN. . . . . . . . ALDNMSVVGYFKHQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTP. . . . . . . . . . . LILI
Template Known Secondary structure  TGGG........GTT


STTTTT


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   390.... .....400.........410.........420.........430.........440...... ...450
 
   301........310.........320.........330.........340.........350.........360......
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Query Sequence  AHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSELTHAPCAPGTLETLSR
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Template Sequence  CNERNLP. . . . . . . . KMRPFDRVCLDIQFR. RPDANSIKSRLMTIAIRE. . . KFKLDPNVIDRLIQ
Template Known Secondary structure  S
TTSS........TTGGGTTTS

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   455....460. ........470...... ...480.........490.... .....500........
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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