Return to main results Retrieve Phyre Job Id

Job DescriptionP0ACY3
Confidence98.65%DateThu Jan 5 11:19:25 GMT 2012
Rank73Aligned Residues162
% Identity19%Templatec1s3sA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:transitional endoplasmic reticulum atpase (ter PDBTitle: crystal structure of aaa atpase p97/vcp nd1 in complex with2 p47 c
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   74.....80.........90........ .100.........110.........120.........130.........140......
Predicted Secondary structure 






.......




























Query SS confidence 
























. . . . . . .















































Query Sequence  AFEEFYGMEDAIEQIVSYLKHAAQG. . . . . . . LEEKKQILYLLGPVGGGKSSLAERLKSLMQLVPIYVLSANGERSPVND
Query Conservation    
 


   

          
  .......     
 


 

 




 

 

  

    

         
  
Alig confidence 
























.......





























..................
Template Conservation     




   
  
   
  

         
       

 

 
 


 
   

    ..................
Template Sequence  GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG. . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
GGG

S

TT







STTSST..................
Template Predicted Secondary structure 

















..................
Template SS confidence 















































































   202.......210.........220.........230.........240.........250.........260...
 
   147..150.........160.........170.........180.........190.........200.........210.........220......
Predicted Secondary structure 






































Query SS confidence 















































































Query Sequence  HPFCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDENNQDISALV
Query Conservation   
   
                       
       
         
 
     

  
 

 
  



    




Alig confidence  ....................................................................











Template Conservation  ....................................................................     
    
 
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AFFFLINGPEIM
Template Known Secondary structure  ....................................................................
Template Predicted Secondary structure  ....................................................................


Template SS confidence 















































































   264.....270.....
 
   227..230.........240.........250.... .....260....... ..270.........280.........290..
Predicted Secondary structure 






















...







...........








Query SS confidence 



























. . .












. . . . . . . . . . .
























Query Sequence  GKVDIRKLEHYAQNDPDAYGYSGALCRA. . . NQGIMEFVEMFKA. . . . . . . . . . . PIKVLHPLLTATQEGNYNGTEGISA
Query Conservation 


       
  
 
      
    
...
 







  
...........    
  

 




 
   
    
Alig confidence 
..........
















...












...........


















......
Template Conservation   ..........   
  
  
   
  
    
 

 




 
                              ......
Template Sequence  S. . . . . . . . . . KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA. . . . . .
Template Known Secondary structure  T..........S
TTT
STGGGT


SSS


TT

GGG......
Template Predicted Secondary structure 
..........






















......
Template SS confidence 















































































   276 ...280.........290.........300.........310.........320.........330.........
 
   293......300.........310.........320. ... .....330.........340........
Predicted Secondary structure 










...





Query SS confidence 




























. .


.























Query Sequence  LPFNGIILAHSNESEWVTFRNNKNNEAFL. . DRV. YIVKVPYCLRISEEIKIYEKLLNH
Query Conservation    

  





             
 
 ..


.  
 


      
 


      
Alig confidence  ...











.....


..



..


.







.














Template Conservation  ... 
 

 

    ..... 
 ..  
 
  

   
    
.    
  

      
Template Sequence  . . . HVIVMAATNRPN. . . . . SID. . PALRRFGRFDREVDIGIP. DATGRLEILQIHTKN
Template Known Secondary structure  ...
S
GG.....GS
..GGGTSTTSS




.
TTTT
Template Predicted Secondary structure  ...



.....

..








.


Template SS confidence 


























































   340.........350. ... .....360.........370.. .......380.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions