Return to main results Retrieve Phyre Job Id

Job DescriptionP29217
Confidence100.00%DateThu Jan 5 11:45:38 GMT 2012
Rank3Aligned Residues84
% Identity39%Templated3bz6a2
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain PSPTO2686-like
Resolution2.21

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   85....90.........100.........110.........120.........130.........140.........150.........160....
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  FCNSEFGDLKLSAAEVALITTLLLRGAQTPGELRSRAARMYEFSDMAEVESTLEQLANREDGPFVVRLAREPGKRENRYM
Query Conservation          
 
   
 


  







 






 

  
 
   

  
  
  
   



 


 

 

 

 
Alig confidence 



....


















































...

















Template Conservation 
   ....
 
   
 


  







 






 

  
 
   

  
  
   ...


  


 

 

 

 
Template Sequence  VDKG. . . . LELVPAQVILTGLLLLRGPQTVSELLTRSNRXHDFEDSEQVVHQLERLIAR. . . GLATLVPRQSGQREDRYX
Template Known Secondary structure 
....T


SB
TTTS

SS...TS


TT

S
Template Predicted Secondary structure 



....

















...










Template SS confidence 















































































   97..100 .........110.........120.........130.........140.........150. ........160.........
 
   165....170.....
Predicted Secondary structure 






Query SS confidence 










Query Sequence  HLFSGEVEDQP
Query Conservation 


 
      
Alig confidence 










Template Conservation 


 
  
   
Template Sequence  HLIGDPEDLQD
Template Known Secondary structure  SSS
GGGG

Template Predicted Secondary structure 







Template SS confidence 










   170.........180
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions