Job Description P29217 Confidence 72.83% Date Thu Jan 5 11:45:38 GMT 2012 Rank 53 Aligned Residues 127 % Identity 23% Template c2xv4S_ PDB info PDB header:transcription Chain: S: PDB Molecule:dna-directed rna polymerase iii subunit rpc3; PDBTitle: structure of human rpc62 (partial) Resolution 2.95 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		Q	L	T	A	L	E	A	R	V	I	G	C	L	L	E	K	Q	V	T	T	P	E	Q	Y	P	L	S	V	N	G	V	V	T	A	C	N	Q	K	T	N	R	E	P	V	M	N	L	S	E	S	E	V	Q	E	Q	L	D	N	L	V	K	R	H	Y	L	R	T	V	S	G	F	G	N	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Template Sequence		H	F	G	E	I	V	E	K	I	G	V	H	L	I	R	T	G	.	.	.	.	.	.	.	S	Q	P	L	R	V	I	A	H	D	T	G	.	.	.	.	.	.	.	.	.	.	T	S	L	D	Q	V	K	K	A	L	C	V	L	V	Q	H	N	L	V	S	Y	Q	V	H	K	R	G	V	V	E	Y	E	A	Q
Template Known Secondary structure																	S		.	.	.	.	.	.	.	S											T	.	.	.	.	.	.	.	.	.	.																T	T	S							T	T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.								.	.	.	.	.	.	.	40	.	.	.	.											.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
										77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																										.												.
Query SS confidence		.	.	.	.	.	.	.	.																																										.												.
Query Sequence		.	.	.	.	.	.	.	.	R	V	T	K	Y	E	Q	R	F	C	N	S	E	F	G	D	L	K	L	S	A	A	E	V	A	L	I	T	T	L	L	L	R	G	A	Q	T	P	G	E	L	.	R	S	R	A	A	R	M	Y	E	F	S	.	D	M	A	E	V	E	S	T	L	E	Q	L	A	N	R	E	D	G
Query Conservation		.	.	.	.	.	.	.	.																																										.												.
Alig confidence		.	.	.	.	.	.	.	.													.	.	.	.	.	.																								.												.																	.	.
Template Conservation																						.	.	.	.	.	.																																																					.	.
Template Sequence		C	S	R	V	L	R	M	L	R	Y	P	R	Y	I	Y	T	T	K	T	L	.	.	.	.	.	.	Y	S	D	T	G	E	L	I	V	E	E	L	L	L	N	G	K	L	T	M	S	A	V	V	K	K	V	A	D	R	L	T	E	T	T	M	D	Y	A	E	V	S	N	T	F	V	R	L	A	D	T	H	.	.
Template Known Secondary structure							G	G	G	G												.	.	.	.	.	.	S																S	B															T																		T	T	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.																																																					.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		147	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	V	V	R	L	A	R	E	P
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	F	V	Q	R	C	P	S	I	P
Template Known Secondary structure		.	S
Template Predicted Secondary structure		.
Template SS confidence
			156	.	.	.	160	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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