Job Description P29217 Confidence 24.09% Date Thu Jan 5 11:45:38 GMT 2012 Rank 152 Aligned Residues 122 % Identity 12% Template c2dbbA_ PDB info PDB header:transcriptional regulator Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061; PDBTitle: crystal structure of ph0061 Resolution 2.00 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	T	A	L	E	A	R	V	I	G	C	L	L	E	K	Q	V	T	T	P	E	Q	Y	P	L	S	V	N	G	V	V	T	A	C	N	Q	K	T	N	R	E	P	V	M	N	L	S	E	S	E	V	Q	E	Q	L	D	N	L	V	K	R	H	Y	L	R	T	V	S	G	F	G	N	R	V	T	K	Y	E	Q
Query Conservation
Alig confidence																				.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation																				.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Sequence		K	L	D	R	V	D	M	Q	L	V	K	I	L	S	E	N	S	R	.	.	.	.	.	.	.	L	T	Y	R	E	L	A	D	I	L	.	.	.	.	.	.	.	.	.	.	N	T	T	R	Q	R	I	A	R	R	I	D	K	L	K	K	L	G	I	I	R	.	.	.	K	F	T	I	I	P	D	I	D	K	L
Template Known Secondary structure																		T	T	.	.	.	.	.	.	.										T	.	.	.	.	.	.	.	.	.	.	T	S																T	S	S		.	.	.								T	G	G	G
Template Predicted Secondary structure																				.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.																						.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.								.	.	.	.	.	.	30	.	.	.											.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.				.	.	.	.	.	60	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.							.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.
Query Sequence		R	F	C	N	S	E	F	G	D	L	K	L	S	A	A	E	V	A	L	I	T	T	L	L	L	R	G	A	.	.	.	.	.	.	Q	T	P	G	E	L	R	S	R	A	A	R	M	Y	E	F	S	D	M	A	E	V	E	S	T	L	E	Q	L	A	N	R	E	D	G
Query Conservation																														.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.						.
Template Conservation																																									.
Template Sequence		G	Y	M	Y	A	I	V	L	I	K	S	K	V	P	S	D	A	D	K	V	I	S	E	I	S	D	I	E	Y	V	K	S	V	E	K	G	V	G	R	.	Y	N	I	I	V	R	L	L	L	P	K	D	I	K	D	A	E	N	L	I	S	E	F	L	Q	R	I	K	N
Template Known Secondary structure		T											S	S												T	T		T	T								S	S	S	.		S									S	S														T			S
Template Predicted Secondary structure																																									.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions