Job Description P77031 Confidence 100.00% Date Thu Jan 5 12:25:28 GMT 2012 Rank 1 Aligned Residues 410 % Identity 13% Template d1pw4a_ SCOP info MFS general substrate transporter MFS general substrate transporter Glycerol-3-phosphate transporter Resolution 3.30

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	H	N	S	Y	R	R	W	I	T	L	A	I	I	S	F	S	G	G	V	S	F	D	L	A	Y	L	R	Y	I	Y	Q	I	P	M	A	K	F	M	G	F	S	N	T	E	I	G	L	I	M	S	T	F	G	I	A	A	I	I	L	Y	A	P	S	G	V	I	A	D	K	F	S	H	R	K	M	I	T	S	A
Query Conservation
Alig confidence																																					.
Template Conservation																																					.
Template Sequence		P	T	Y	R	R	L	R	W	Q	I	F	L	G	I	F	F	G	Y	A	A	Y	Y	L	V	R	K	N	F	A	L	A	M	P	Y	L	.	V	E	Q	G	F	S	R	G	D	L	G	F	A	L	S	G	I	S	I	A	Y	G	F	S	K	F	I	M	G	S	V	S	D	R	S	N	P	R	V	F	L	P	A	G
Template Known Secondary structure																											T	S								T	.	T	S	S	T	T		S	S																											S
Template Predicted Secondary structure																																					.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.					.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.
Query SS confidence													.	.	.	.
Query Sequence		M	I	I	T	G	L	L	G	L	L	M	.	.	.	.	A	T	Y	P	P	L	W	V	M	L	C	I	Q	I	A	F	A	I	T	T	I	L	M	L	W	S	V	S	I	K	A	A	S	L	L	G	D	H	S	E	Q	G	K	I	M	G	W	M	E	G	L	R	G	V	G	V	M	S	L	A	V	F	T	M	W
Query Conservation													.	.	.	.
Alig confidence													.	.	.	.																									.
Template Conservation																																									.
Template Sequence		L	I	L	A	A	A	V	M	L	F	M	G	F	V	P	W	A	T	S	S	I	A	V	M	F	V	L	L	F	L	C	G	W	F	Q	G	M	G	W	.	P	P	C	G	R	T	M	V	H	W	W	S	Q	K	E	R	G	G	I	V	S	V	W	N	C	A	H	N	V	G	G	G	I	P	P	L	L	F	L	L
Template Known Secondary structure																				S	S	S	S																T		.									T	T		T	T	T																		T	S
Template Predicted Secondary structure																																									.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	S	R	F	A	P	D	D	S	T	S	L	K	T	V	I	I	I	Y	S	V	V	Y	I	L	L	G	I	L	C	W	F	F	V	S	D	N	N	N	L	R	S	A	N	N	E	E	K	Q	S	F	Q	L	S	D	I	L	A	V	L	R	I	S	T	T	W	Y	C	S	M	V	I	F	G	V	F	T	I	Y
Query Conservation
Alig confidence												.	.
Template Conservation												.	.
Template Sequence		G	M	A	W	F	N	D	W	H	A	.	.	A	L	Y	M	P	A	F	C	A	I	L	V	A	L	F	A	F	A	M	M	R	D	T	P	Q	S	C	G	L	P	P	I	E	E	Y	K	N	D	T	A	K	Q	I	F	M	Q	Y	V	L	P	N	K	L	L	W	Y	I	A	I	A	N	V	F	V	Y	L	L	R
Template Known Secondary structure						T			S	T	T	.	.		T																					S	S	T	T	T				S		T	T	T						T							T	S	S
Template Predicted Secondary structure												.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	L	S	Y	S	T	N	Y	L	T	E	M	Y	G	M	S	L	V	A	A	S	Y	M	G	I	V	I	N	K	I	F	R	A	L	C	G	P	L	G	G	I	I	T	T	Y	S	K	V	K	S	P	T	R	V	I	Q	I	L	S	V	L	G	L	L	T	L	T	A	L	L	V	T	N	S	N	P	Q	S	V
Query Conservation
Alig confidence																																																					.	.
Template Conservation																																																					.	.
Template Sequence		Y	G	I	L	D	W	S	P	T	Y	L	K	E	V	K	H	F	A	L	D	K	S	S	W	A	Y	F	L	Y	E	Y	A	G	I	P	G	T	L	L	C	G	W	M	S	D	K	V	F	R	G	N	.	.	R	G	A	T	G	V	F	F	M	T	L	V	T	I	A	T	I	V	Y	W	M	N	P	A	G	N	P
Template Known Secondary structure												B	T	T	B	S																																T	S	T	T		.	.																			T	T	S			T	T
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320			.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.		.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		A	M	G	I	G	L	I	L	L	L	G	F	T	C	Y	A	S	R	G	L	Y	W	A	C	P	G	E	A	R	T	P	S	Y	I	M	G	T	T	V	G	I	C	S	V	I	G	F	L	.	P	D	V	F	V	Y	P	I	I	G	H	W	Q	D	T	L	P	A	A	E	A	Y	R	N	M	W	L	M	G	M	A
Query Conservation																																																		.
Alig confidence																														.																				.																		.	.	.	.
Template Conservation																														.																																						.	.	.	.
Template Sequence		T	V	D	M	I	C	M	I	V	I	G	F	L	I	Y	G	P	V	M	L	I	G	L	H	A	L	E	L	.	A	P	K	K	A	A	G	T	A	A	G	F	T	G	L	F	G	Y	L	G	G	S	V	A	A	S	A	I	V	G	Y	T	V	D	F	F	G	.	.	.	.	W	D	G	G	F	M	V	M	I	G
Template Known Secondary structure																T													T	.	S		T	T																															S	S		.	.	.	.	S
Template Predicted Secondary structure																														.																																						.	.	.	.
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.		.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.					.	.	.	.	.	.	.	420	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	G	M	V	I	V	F	T	F	L	L	F	Q	K	I	R	T	A	D	S	A	P	A	M	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	S	I	L	A	V	I	L	L	I	V	V	M	I	G	E	K	R	R	H	E	Q	L	L	Q	E
Template Known Secondary structure																							G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions