Job Description P76558 Confidence 100.00% Date Thu Jan 5 12:24:36 GMT 2012 Rank 3 Aligned Residues 416 % Identity 38% Template c3nv9A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:malic enzyme; PDBTitle: crystal structure of entamoeba histolytica malic enzyme Resolution 2.25 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	Q	S	A	L	D	F	H	E	F	P	V	P	G	K	I	Q	V	S	P	T	K	P	L	A	T	Q	R	D	L	A	L	A	Y	S	P	G	V	A	A	P	C	L	E	I	E	K	D	P	L	K	A	Y	K	Y	T	A	R	G	N	L	V	A	V	I	S	N	G	T	A	V	L	G	L	G	N	I	G	A
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence		Y	K	E	L	A	E	K	V	H	K	F	Y	K	.	G	K	I	Q	I	M	P	K	C	T	L	A	G	F	N	W	F	N	A	Y	Y	T	P	G	V	S	R	I	S	T	N	I	R	D	N	N	D	S	S	L	F	Y	S	L	R	G	N	F	V	G	V	V	S	D	S	T	R	V	L	G	D	G	D	V	T	P
Template Known Secondary structure														T	.	S	S							S			S	S	G	G	G					S	T	T	T												G	G	G					S	G	G	G	G								S	S	S	B	G	G	G	B				G
Template Predicted Secondary structure															.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.							.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.
Query Sequence		L	A	G	K	P	V	M	E	G	K	G	V	L	F	K	K	F	A	G	I	D	V	F	D	I	E	V	D	E	.	.	.	.	.	.	L	D	P	D	K	F	I	E	V	V	A	A	L	E	P	T	F	G	G	I	N	L	E	D	I	K	A	P	E	C	F	Y	I	E	Q	K	L	R	E	R	M	N	I	P	V
Query Conservation																															.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.
Template Conservation
Template Sequence		P	G	G	L	G	V	M	E	G	K	A	L	L	M	K	Y	L	G	G	I	D	A	V	P	I	C	I	D	S	K	N	K	E	G	K	N	D	P	D	A	V	I	E	F	V	Q	R	I	Q	H	T	F	G	A	I	N	L	E	D	I	S	Q	P	N	C	Y	K	I	L	D	V	L	R	E	S	C	D	I	P	V
Template Known Secondary structure		G	G	G																											B		T	T	S		B													G	G	G		S						S			T	T														S	S
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.					.	.	.
Predicted Secondary structure																																																																											.	.	.	.
Query SS confidence																																																																											.	.	.	.
Query Sequence		F	H	D	D	Q	H	G	T	A	I	I	S	T	A	A	I	L	N	G	L	R	V	V	E	K	N	I	S	D	V	R	M	V	V	S	G	A	G	A	A	A	I	A	C	M	N	L	L	V	A	L	G	L	Q	K	H	N	I	V	V	C	D	S	K	G	V	I	Y	Q	G	R	E	P	.	.	.	.	N	M	A
Query Conservation																																																																											.	.	.	.
Alig confidence																																																																											.	.	.	.
Template Conservation
Template Sequence		W	H	D	D	Q	Q	G	T	A	S	V	T	L	A	G	L	L	N	A	L	K	L	V	K	K	D	I	H	E	C	R	M	V	F	I	G	A	G	S	S	N	T	T	C	L	R	L	I	V	T	A	G	A	D	P	K	K	I	V	M	F	D	S	K	G	S	L	H	N	G	R	E	D	I	K	K	D	T	R	F
Template Known Secondary structure				T	T	T																			T			G	G	G									S													T	T			G	G	G						T	T					T	T								G	G	G
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		235	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.			.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure														.	.																				.	.
Query SS confidence														.	.																				.	.
Query Sequence		E	T	K	A	A	Y	A	V	V	D	D	G	.	.	K	R	T	L	D	D	V	I	E	G	A	D	I	F	L	G	C	S	G	.	.	P	K	V	L	T	Q	E	M	V	K	K	M	A	R	A	P	M	I	L	A	L	A	N	P	E	P	E	I	L	P	P	L	A	K	E	V	R	P	D	A	I	I	C	T	G
Query Conservation														.	.																				.	.
Alig confidence														.	.																				.	.																																		.
Template Conservation																																																																						.
Template Sequence		Y	R	K	W	E	I	C	E	T	T	N	P	S	K	F	G	S	I	A	E	A	C	V	G	A	D	V	L	I	S	L	S	T	P	G	P	G	V	V	K	A	E	W	I	K	S	M	G	E	K	P	I	V	F	C	C	A	N	P	V	P	E	I	Y	P	Y	E	A	.	K	E	A	G	A	Y	I	V	A	T	G
Template Known Secondary structure											S		T	T				S						T	T		S								S	S											T	S		S	S								S	S	S		S	S						.			T	T		S					S
Template Predicted Secondary structure																																																																						.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.		.	340	.	.	.	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	D	Y	P	N	Q	V	N	N	V	L	C	F	P	F	I	F	R	G	A	L	D	V	G	A	T	A	I	N	E	E	M	K	L	A	A	V	R	A	I	A	E	L	A	H	A	E	Q	S	E	V	V	A	S	A	Y	G	D	Q	D	L	S	F	G	P	E	Y	I	I	P	K	P	F	D	P	R	L	I	V
Query Conservation
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	G	D	F	P	N	Q	V	N	N	S	V	G	F	P	G	I	L	K	G	A	L	I	V	R	A	R	K	I	T	D	N	M	A	I	A	A	S	R	A	L	A	E	F	A	E	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	N	P	D	N	I	I	G	T	M	D	E	P	G	I	F	P
Template Known Secondary structure			T	T	S	S	S	B			G	G	G	T											T	T		S	S																				T	.	.	.	.	.	.	.	.	.	.	.	.	.	.			B	T	T	B		S			T	T		T	T
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.															.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	A	P	A	V	A	K	A	A	M	E	S	G	V	A	T	R	P	I	A	D	F	D	V	Y	I	D	K	L	T	E	F	V	Y	K	T	N	L	F	M	K	P	I	F	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	A	A	D	V	A	M	Q	A	I	K	D	G	V	A	R	V	T	D	L	T	W	Q	Q	V	Y	D	I	A	E	H	D	I	K	E	A	R	E	S	A	Q	L	L	Q	D
Template Known Secondary structure															T			S
Template Predicted Secondary structure
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.