Job Description P76558 Confidence 95.74% Date Thu Jan 5 12:24:36 GMT 2012 Rank 120 Aligned Residues 210 % Identity 16% Template c3n7uD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:formate dehydrogenase; PDBTitle: nad-dependent formate dehydrogenase from higher-plant arabidopsis2 thaliana in complex with nad and azide Resolution 2.00 Å

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		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.				.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.																					180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	Q	K	L	R	E	R	M	N	I	P	V	F	H	D	.	.	.	D	Q	H	G	T	A	I	I	S	T	A	A	I	L	N	G	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	E	K	N	I	S	D	V	R	M	V	V	S	G	A	G	A	A	A	I	A	C	M
Query Conservation																	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.								.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.
Template Sequence		L	Q	A	A	A	A	A	.	G	L	T	V	A	E	V	T	G	S	N	V	V	S	V	A	E	D	E	L	M	R	I	L	I	L	M	R	N	F	V	P	G	Y	N	Q	V	V	K	G	E	W	N	V	A	G	I	A	Y	R	A	Y	D	L	E	G	K	T	I	G	T	V	G	A	G	R	I	G	K	L	L	L
Template Known Secondary structure									.	T							T	T	S	S																	T	T										T	T				T					T	T				S	T	T									S
Template Predicted Secondary structure									.
Template SS confidence
		129	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.						.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.
Query Sequence		N	L	L	V	A	L	G	L	Q	K	H	N	I	V	V	C	D	S	K	G	V	I	Y	Q	G	R	E	P	N	M	A	E	T	K	A	A	Y	A	V	V	D	D	G	K	R	T	L	D	D	V	I	E	G	A	D	I	F	L	G	C	.	.	.	.	.	S	G	P	K	V	L	T	Q	E	M	V	K	K	M	A
Query Conservation																																																														.	.	.	.	.
Alig confidence										.	.	.									.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.
Template Conservation										.	.	.									.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	R	L	K	P	F	G	C	.	.	.	N	L	L	Y	H	D	R	L	.	.	.	.	.	.	.	.	.	.	Q	M	A	P	E	L	E	K	E	T	G	A	K	F	V	E	D	L	N	E	M	L	P	K	C	D	V	I	V	I	N	M	P	L	T	E	K	T	R	G	M	F	N	K	E	L	I	G	K	L	K
Template Known Secondary structure					G	G	G			.	.	.							S	S	.	.	.	.	.	.	.	.	.	.											T					S	S					G	G	G		S						S				T	T	T	T	T		B							T	S
Template Predicted Secondary structure										.	.	.									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		208	.	210	.	.	.	.	.				.	.	.	.	220	.	.	.											.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.										.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure														.	.																										.	.	.	.	.	.	.	.	.
Query SS confidence														.	.																										.	.	.	.	.	.	.	.	.
Query Sequence		R	A	P	M	I	L	A	L	A	N	P	E	.	.	P	E	I	L	P	P	L	A	K	E	V	R	P	D	A	I	I	C	T	G	R	S	D	Y	P	.	.	.	.	.	.	.	.	.	N	Q	V	N	N	V	L	C	F	P	F	I	F	R	G	A	L	D	V	G	A	T	A	I	N	E	E	M	K	L	A	A
Query Conservation														.	.																										.	.	.	.	.	.	.	.	.
Alig confidence														.	.												.														.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Template Conservation																											.																																													.	.	.	.	.
Template Sequence		K	G	V	L	I	V	N	N	A	R	G	A	I	M	E	R	Q	A	V	V	D	A	V	E	S	.	G	H	I	G	G	Y	S	G	D	V	W	D	P	Q	P	A	P	K	D	H	P	W	R	Y	M	P	N	Q	A	M	T	P	H	T	S	G	T	T	I	D	A	Q	L	R	.	.	.	.	.	Y	A	A	G	T
Template Known Secondary structure		T	T							S		G	G	G	B												.	T	S							S			S	S	S	S			T	T		G	G	G	T	S	T	T					S	S		G	G	G	S							.	.	.	.	.
Template Predicted Secondary structure																											.																																													.	.	.	.	.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.						.	.	.	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	A	I	A	E	L	A	H	A	E	Q	S	E	V	V	A	S	A	Y	G	D	Q	D	L	S	F	G	P	E	Y
Query Conservation
Alig confidence																					.	.
Template Conservation																					.	.
Template Sequence		K	D	M	L	E	R	Y	F	K	G	E	D	F	P	T	E	N	Y	I	.	.	V	K	D	G	E	L	A	P	Q	Y
Template Known Secondary structure										T	T					G	G	G			.	.			T	T				G	G	G
Template Predicted Secondary structure																					.	.
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.			.	.	370	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions