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Job DescriptionP76558
Confidence89.95%DateThu Jan 5 12:24:36 GMT 2012
Rank230Aligned Residues200
% Identity17%Templatec2nacA_
PDB info PDB header:oxidoreductase(aldehyde(d),nad+(a))Chain: A: PDB Molecule:nad-dependent formate dehydrogenase; PDBTitle: high resolution structures of holo and apo formate dehydrogenase
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   147..150.........160.........170.........180. ........190.........200...
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Query Sequence  EQKLRERMNIPVFHDDQHGTAIISTAAILNGLRVV. . . . . . . . . . . . . . . . . . . . . . . EKNISDVRMVVSGAGAAAIACM
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Template Sequence  LQSAIDR. NVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVL
Template Known Secondary structure  T.T

TTTTTTTT


TT



TT


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   129130..... ....140.........150.........160.........170.........180.........190.........200.......
 
   204.....210.........220.........230.........240.........250.........260... ......270........
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Query Sequence  NLLVALGLQKHNIVVCDSKGVIYQGREPNMAETKAAYAVVDDGKRTLDDVIEGADIFLGC. . . . . SGPKVLTQEMVKKMA
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Template Sequence  RRLAPFDV. . . HLHYTDRHR. . . . . . . . . . LPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFK
Template Known Secondary structure  GGGT
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SSGGG
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TTTTT
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   208.210..... ....220.... .....230.........240.........250.........260.........270....
 
   279280.........290 .........300.........310..... ....320.........330.........340.......
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Query Sequence  RAPMILALANPE. . PEILPPLAKEVRPDAIICTGRSDYP. . . . . . . . . NQVNNVLCFPFIFRGALDVGATAINEEMKLAA
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Template Sequence  RGAYIVNTARGKLCDRDAVARALES. GRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHIS. . . . . GTTLTAQARYAAGT
Template Known Secondary structure  TT
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GGGB
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   275....280.........290......... 300.........310.........320.........330.... .....340........
 
   348.350.........360.........370.........380
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Query Sequence  VRAIAELAHAEQSEVVASAYGDQDLSFGPEYII
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Template Sequence  REILECFFEGR. . . . . . . . . . . . . . PIRDEYLI
Template Known Secondary structure  T
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GGG
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   349350......... 360.......
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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