 |
Job Description | P76558 | Confidence | 95.54% | Date | Thu Jan 5 12:24:36 GMT 2012 |
Rank | 125 | Aligned Residues | 120 |
% Identity | 13% | Template | c2hjrK_ |
PDB info |
PDB header:oxidoreductase | Chain: K: PDB Molecule:malate dehydrogenase; |
PDBTitle: crystal structure of cryptosporidium parvum malate2 dehydrogenase
|
Resolution | 2.20 Å |
|
 |
  |   |
189 | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | |
. | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
| . |
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | M | V | V | S | G | A | G | A | A | A | I | A | C | M | N | L | L | V | A | L | G | L | Q | K | H | N | I | V | V | C | D | S | K | G | V | I | Y | Q | G | R | E | P | N | M | A | E | T | K | A | A | Y | A | V | V | D | D | G | . |
K | R | T | L | D | D | V | I | E | G | A | D | I | F | L | G | C | S | G | P | K |
Query Conservation |   |
  |
|
|   |   |
|
|
|
|
|
|   |
|
|
|   |
|
|   |   |   |
|   |   |   |   |   |
|   |   |   |
|   |   |
|
|
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   | . |   |   |   |
|   |
|   |
|   |   |   |   |
|
|
|
|   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|
|
|   |
|
|   |   |   |
|   |   |
|   |   |   |   |   | . | . |   |
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |
|
|
|   |   |
|
|
|
|
|
|   |   |   |   |   |
Template Sequence |   |
K | I | S | I | I | G | A | G | Q | I | G | S | T | I | A | L | L | L | G | Q | K | D | L | . |
. |
G | D | V | Y | M | F | D | I | I | E | G | V | P | Q | G | K | A | L | D | L | N | H | C | M | A | L | I | G | S | P | A | K | I | F | G | E | N | N | Y | E | Y | L | Q | N | S | D | V | V | I | I | T | A | G | V | P |
Template Known Secondary structure |   |
 |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| . | . | S |  |  |  |  |  |
| S | S | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|
|
|  |  |  |  | S |
| G | G | G | G | T | T |
| S |  |  |  |  |
|
| S |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . |
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
16 | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | |
|
. | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . |
  |
  |   |
268 | . | 270 | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | |
|
|
. | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | |
|
. | . | . | . | . | . | . | . | . | 310 |
Predicted Secondary structure |   |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
| . | . | . |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  | . | . |
|
|
|
|  |  |  |  |
|
|
Query SS confidence |   |
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | L | T | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Q | E | M | V | K | K | M | A | . |
. |
. |
R | A | P | M | I | L | A | L | A | N | P | E | P | E | I | L | P | P | L | A | K | E | . |
. |
V | R | P | D | A | I | I | C | T | G |
Query Conservation |   |
  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |
|   |
|   |   |
|
| . | . | . |   |   |
|
|
|
|
|
|
|
|
|
|   |
|   |   |
|
|   |
|   |   | . | . |   |   |
|   |   |
|   |
|
|
|
Alig confidence |   |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |
|   |
|   |
|
|   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |   |
Template Sequence |   |
R | K | P | N | M | T | R | S | D | L | L | T | V | N | A | K | I | V | G | S | V | A | E | N | V | G | K | Y | C | P | N | A | F | V | I | C | I | T | N | P | L | D | A | M | V | Y | Y | F | K | E | K | S | G | I | P | A | N | K | V | C | G | M | S |
Template Known Secondary structure |   |
|
| T | T |
|
| S | G | G | G |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T | S |  |  |  |  |
|
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| G | G | G |  |  |  |  |
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
94 | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|