Job Description P76558 Confidence 90.83% Date Thu Jan 5 12:24:36 GMT 2012 Rank 220 Aligned Residues 227 % Identity 12% Template c2g5cD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of prephenate dehydrogenase from aquifex aeolicus Resolution 1.90 Å

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		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	M	V	V	S	G	A	G	A	A	A	I	A	C	M	N	L	L	V	A	L	G	L	Q	K	H	N	I	V	V	C	D	S	K	G	V	I	Y	Q	G	R	E	P	N	M	A	E	T	K	A	A	Y	A	V	V	D	D	G	K	R	T	L	D	D	V	I	E	G	A	D	I	F	L	G	C	S	G	P	K
Query Conservation
Alig confidence																											.										.	.	.	.	.	.	.
Template Conservation																											.										.	.	.	.	.	.	.
Template Sequence		Q	N	V	L	I	V	G	V	G	F	X	G	G	S	F	A	K	S	L	R	R	S	G	F	K	.	G	K	I	Y	G	Y	D	I	N	.	.	.	.	.	.	.	P	E	S	I	S	K	A	V	D	L	G	I	I	D	E	G	T	T	S	I	A	K	V	E	D	F	S	P	D	F	V	X	L	S	S	P	V	R
Template Known Secondary structure								S		S													T	T			.	S							S		.	.	.	.	.	.	.										T	T	S		S				S		G	G	G	G	G	G	G			S						S		G	G
Template Predicted Secondary structure																											.										.	.	.	.	.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.								.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		268	.	270	.	.	.	.	.	.	.	.					.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330			.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure													.	.	.	.																																																					.	.
Query SS confidence													.	.	.	.																																																					.	.
Query Sequence		V	L	T	Q	E	M	V	K	K	M	A	.	.	.	.	R	A	P	M	I	L	A	L	A	N	P	E	P	E	I	L	P	P	L	A	K	E	V	R	P	D	A	I	I	C	T	G	R	S	D	Y	P	N	Q	V	N	N	V	L	C	F	P	F	I	F	R	G	.	.	A	L	D	V	G	A	T	A	I	N	E
Query Conservation													.	.	.	.																																																					.	.
Alig confidence				.									.	.	.	.																								.																													.	.
Template Conservation				.																																				.
Template Sequence		T	F	.	R	E	I	A	K	K	L	S	Y	I	L	S	E	D	A	T	V	T	D	Q	G	S	V	K	G	K	L	V	Y	D	L	E	N	I	L	.	G	K	R	F	V	G	G	H	P	I	A	G	T	E	K	S	G	V	E	Y	S	L	D	N	L	Y	E	G	K	K	V	I	L	T	P	T	K	K	T	D	K
Template Known Secondary structure		G		.											S		T	T								S			T											.	G	G	G											S			S	G	G	G			S	S	T	T	T	T									T	T	S
Template Predicted Secondary structure				.																																				.
Template SS confidence
		103	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.							.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure																																														.	.	.	.	.	.																										.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.																										.	.	.	.	.
Query Sequence		E	M	K	L	A	A	V	R	A	I	A	E	L	A	H	A	E	Q	S	E	V	V	A	S	A	Y	G	D	Q	D	L	S	F	G	P	E	Y	I	I	P	K	P	F	D	.	.	.	.	.	.	P	R	L	I	V	K	I	A	P	A	V	A	K	A	A	M	E	S	G	V	A	T	R	P	I	.	.	.	.	.
Query Conservation																																														.	.	.	.	.	.																										.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.																										.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	R	L	K	L	V	K	R	V	W	E	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	V	V	E	Y	X	S	P	E	L	H	D	Y	V	F	G	V	V	S	H	L	P	H	A	V	A	F	A	L	V	D	T	L	I	H	X	S	T	P	E	V	D	L	F	K	Y	P	G
Template Known Secondary structure														T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T																			T																	T			S	S			G	G	G
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.																			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
																															411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.					.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	F	D	V	Y	I	D	K	L	T	E	F	V	Y	K	T	N	.	.	.	.	L	F	M	K	P	I	F	S	Q	A	R	K	A	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation
Template Sequence		G	G	F	K	D	F	T	R	I	A	K	S	D	P	I	X	W	R	D	I	F	L	E	N	K	E	N	V	X	K	A	I	E	G	F	E	K	S	L	N	H	L	K	E	L	I	V	R	E	A	E	E	E	L	V	E	Y	L	K	E	V	K	I	K	R
Template Known Secondary structure								T	G	G	G	G	S												T																								T	T										G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions