Job Description P76558 Confidence 85.44% Date Thu Jan 5 12:24:36 GMT 2012 Rank 307 Aligned Residues 235 % Identity 13% Template c2f1kD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of synechocystis arogenate dehydrogenase Resolution 1.55 Å

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		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.				.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.
Query SS confidence																																																														.	.	.
Query Sequence		R	M	V	V	S	G	A	G	A	A	A	I	A	C	M	N	L	L	V	A	L	G	L	Q	K	H	N	I	V	V	C	D	S	K	G	V	I	Y	Q	G	R	E	P	N	M	A	E	T	K	A	A	Y	A	V	V	D	D	G	K	R	.	.	.	T	L	D	D	V	I	E	G	A	D	I	F	L	G	C	S	G
Query Conservation																																																														.	.	.
Alig confidence																									.	.	.									.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation																									.	.	.									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	G	V	V	G	L	G	L	I	G	A	S	L	A	G	D	L	R	R	R	G	H	.	.	.	Y	L	I	G	V	S	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	T	C	E	K	A	V	E	R	Q	L	V	D	E	A	G	Q	D	L	S	L	L	Q	T	A	K	I	I	F	L	C	T	P
Template Known Secondary structure									S													T	T		.	.	.							S		.	.	.	.	.	.	.	.	.	.	.	.										T	T	S		S				S		G	G	G	G	T	T		S						S
Template Predicted Secondary structure																									.	.	.									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.				.	.	.	.	.	30	.	.													.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.					.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.																							.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.																							.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	K	V	L	T	Q	E	M	V	K	K	M	A	.	.	.	.	R	A	P	M	I	L	A	L	A	N	P	E	P	E	I	L	P	P	L	A	K	E	.	V	R	P	D	A	I	I	C	T	G	R	S	D	Y	P	N	Q	V	N	N	V	L	C	F	P	F	I	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation															.	.	.	.																							.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.									.	.	.	.																							.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.
Template Sequence		I	Q	L	I	.	L	P	T	L	E	K	L	I	P	H	L	S	P	T	A	I	V	T	D	V	A	S	V	K	T	A	I	A	E	P	A	S	Q	L	W	S	G	F	I	G	G	H	P	A	G	T	A	A	Q	G	I	D	G	A	E	E	N	L	F	V	N	A	P	Y	V	L	T	P	T	E	Y	T	D	P	E
Template Known Secondary structure		G	G	G		.								G	G	G	S		T	T								S			T	T	T									T	T										S			S	G	G	G			S	S	T	T	T	T									T	T
Template Predicted Secondary structure						.
Template SS confidence
		67	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
								328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.				.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																	.	.	.
Query SS confidence		.	.	.	.	.	.																	.	.	.
Query Sequence		.	.	.	.	.	.	F	R	G	A	L	D	V	G	A	T	A	I	N	E	E	M	.	.	.	K	L	A	A	V	R	A	I	A	E	L	A	H	A	E	Q	S	E	V	V	A	S	A	Y	G	D	Q	D	L	S	F	G	P	E	Y	I	I	P	K	P	F	D	P	R	L	I	V	K	I	A	P	A	V	A	K
Query Conservation		.	.	.	.	.	.																	.	.	.
Alig confidence		.	.	.	.	.	.																	.	.	.
Template Conservation
Template Sequence		Q	L	A	L	R	S	V	L	E	P	L	G	V	K	I	Y	L	C	T	P	A	D	H	D	Q	A	V	A	W	I	S	H	L	P	V	M	V	S	A	A	L	I	Q	A	C	A	G	E	K	D	G	D	I	L	K	L	A	Q	N	L	A	S	S	G	F	R	D	T	S	R	V	G	G	G	N	P	E	L	G	T
Template Known Secondary structure										G	G	G	T																			T																T		S																					T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.					.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure																																.	.	.	.
Query SS confidence																																.	.	.	.
Query Sequence		A	A	M	E	S	G	V	A	T	R	P	I	A	D	F	D	V	Y	I	D	K	L	T	E	F	V	Y	K	T	N	.	.	.	.	L	F	M	K	P	I	F	S	Q	A	R	K
Query Conservation																																.	.	.	.
Alig confidence													.																			.	.	.	.
Template Conservation													.
Template Sequence		M	M	A	T	Y	N	Q	R	A	L	L	.	K	S	L	Q	D	Y	R	Q	H	L	D	Q	L	I	T	L	I	S	N	Q	Q	W	P	E	L	H	R	L	L	Q	Q	T	N	G
Template Known Secondary structure							T						.																			T	T
Template Predicted Secondary structure													.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions