Job Description P76558 Confidence 100.00% Date Thu Jan 5 12:24:36 GMT 2012 Rank 1 Aligned Residues 404 % Identity 45% Template c1ww8A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:malate oxidoreductase; PDBTitle: crystal structure of malic enzyme from pyrococcus2 horikoshii ot3 Resolution 2.50 Å

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		5	.	.	.	.	10	.	.	.	.	.	.				.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure														.	.	.
Query SS confidence														.	.	.
Query Sequence		L	K	Q	S	A	L	D	F	H	E	F	P	.	.	.	V	P	G	K	I	Q	V	S	P	T	K	P	L	A	T	Q	R	D	L	A	L	A	Y	S	P	G	V	A	A	P	C	L	E	I	E	K	D	P	L	K	A	Y	K	Y	T	A	R	G	N	L	V	A	V	I	S	N	G	T	A	V	L	G	L	G	N
Query Conservation														.	.	.
Alig confidence														.	.	.		.
Template Conservation																		.
Template Sequence		I	R	E	K	A	L	E	F	H	K	N	N	F	P	G	N	.	G	K	I	E	V	I	P	K	V	S	L	E	S	R	E	E	L	T	L	A	Y	T	P	G	V	A	E	P	C	K	E	I	A	R	D	P	G	K	V	Y	E	Y	T	S	K	G	N	L	V	A	V	V	S	D	G	S	R	I	L	G	L	G	N
Template Known Secondary structure										T	S			S	S	S	S	.	S	S						S	S				S								S	T	T	T	T											G	G	G					S	S	G	G	G								S	S	S	B	T	T	T	B	S
Template Predicted Secondary structure																		.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	A	L	A	G	K	P	V	M	E	G	K	G	V	L	F	K	K	F	A	G	I	D	V	F	D	I	E	V	D	E	L	D	P	D	K	F	I	E	V	V	A	A	L	E	P	T	F	G	G	I	N	L	E	D	I	K	A	P	E	C	F	Y	I	E	Q	K	L	R	E	R	M	N	I	P	V	F	H	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	G	P	L	A	G	L	P	V	X	E	G	K	A	L	L	F	K	R	F	G	G	V	D	A	F	P	I	X	I	K	E	Q	E	P	N	K	F	I	D	I	V	K	A	I	A	P	T	F	G	G	I	N	L	E	D	I	A	S	P	K	C	F	Y	I	L	E	R	L	R	E	E	L	D	I	P	V	F	H	D
Template Known Secondary structure							T																									S			S												G	G	G		S						S			T	T														S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.				.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.			.	.	.	.	.
Predicted Secondary structure																																																								.	.	.																	.	.
Query SS confidence																																																								.	.	.																	.	.
Query Sequence		D	Q	H	G	T	A	I	I	S	T	A	A	I	L	N	G	L	R	V	V	E	K	N	I	S	D	V	R	M	V	V	S	G	A	G	A	A	A	I	A	C	M	N	L	L	V	A	L	G	L	Q	K	H	N	.	.	.	I	V	V	C	D	S	K	G	V	I	Y	Q	G	R	E	P	.	.	N	M	A	E	T
Query Conservation																																																								.	.	.																	.	.
Alig confidence																																																								.	.	.																	.	.
Template Conservation
Template Sequence		D	Q	Q	G	T	A	A	V	V	L	A	G	L	L	N	A	L	K	V	V	G	K	K	I	S	E	I	T	L	A	L	F	G	A	G	A	A	G	F	A	T	L	R	I	L	T	E	A	G	V	K	P	E	N	V	R	V	V	E	L	V	N	G	K	P	R	I	L	T	S	D	L	D	L	E	K	L	F	P	Y
Template Known Secondary structure																					T	T			T	T	T									S														T			G	G	G								T	T							T	T	S						S	T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		237	.	.	240	.	.	.	.	.	.	.	.				.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure														.	.	.																			.	.
Query SS confidence														.	.	.																			.	.
Query Sequence		K	A	A	Y	A	V	V	D	D	G	K	R	.	.	.	T	L	D	D	V	I	E	G	A	D	I	F	L	G	C	S	G	P	.	.	K	V	L	T	Q	E	M	V	K	K	M	A	R	A	P	M	I	L	A	L	A	N	P	E	P	E	I	L	P	P	L	A	K	E	V	R	P	D	A	I	I	C	T	G	R
Query Conservation														.	.	.																			.	.
Alig confidence														.	.	.																			.	.																																	.
Template Conservation																																																																					.
Template Sequence		R	G	W	L	L	K	K	T	N	G	E	N	I	E	G	G	P	Q	E	A	L	K	D	A	D	V	L	I	S	F	T	R	P	G	P	G	V	I	K	P	Q	W	I	E	K	X	N	E	D	A	I	V	F	P	L	A	N	P	V	P	E	I	L	P	E	E	A	.	K	K	A	G	A	R	I	V	A	T	G	R
Template Known Secondary structure							T	T			T	T				S	S						T	T		S									S	T	T	S	S						T	T	S		T	T								S	S	S		S	S						.			T	T						B	S
Template Predicted Secondary structure																																																																					.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	Y	P	N	Q	V	N	N	V	L	C	F	P	F	I	F	R	G	A	L	D	V	G	A	T	A	I	N	E	E	M	K	L	A	A	V	R	A	I	A	E	L	A	H	A	E	Q	S	E	V	V	A	S	A	Y	G	D	Q	D	L	S	F	G	P	E	Y	I	I	P	K	P	F	D	P	R	L	I	V	K
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	D	Y	P	N	Q	I	N	N	L	L	G	F	P	G	I	F	R	G	A	L	D	V	R	A	R	T	I	T	D	S	X	I	I	A	A	A	K	A	I	A	S	I	V	E	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	E	N	I	I	P	S	P	L	N	P	I	V	Y	A	R
Template Known Secondary structure		T	T	S	S	S	B			G	G	G	T											T	T		S																	T		S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	T	T	B	S	S			T	T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.																	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410			.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		I	A	P	A	V	A	K	A	A	M	E	S	G	V	A	T	R	P	I	.	.	A	D	F	D	V	Y	I	D	K	L	T	E	F	V	Y	K
Query Conservation																					.	.
Alig confidence																					.	.
Template Conservation
Template Sequence		E	A	R	A	V	A	E	E	A	X	K	E	G	V	A	R	T	K	V	K	G	E	W	V	E	E	H	T	I	R	L	I	E	F	Y	E	N
Template Known Secondary structure														T			S	S
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420