Job Description P76558 Confidence 100.00% Date Thu Jan 5 12:24:36 GMT 2012 Rank 4 Aligned Residues 371 % Identity 47% Template c1vl6C_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:malate oxidoreductase; PDBTitle: crystal structure of nad-dependent malic enzyme (tm0542) from2 thermotoga maritima at 2.61 a resolution Resolution 2.61 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	L	D	F	H	E	F	P	V	P	G	K	I	Q	V	S	P	T	K	P	L	A	T	Q	R	D	L	A	L	A	Y	S	P	G	V	A	A	P	C	L	E	I	E	K	D	P	L	K	A	Y	K	Y	T	A	R	G	N	L	V	A	V	I	S	N	G	T	A	V	L	G	L	G	N	I	G	A	L	A	G
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		D	A	L	E	V	H	R	F	L	K	.	G	K	I	R	T	A	L	P	V	E	K	V	D	R	E	T	L	S	L	L	Y	T	P	G	V	A	D	V	A	R	A	C	A	E	D	P	E	K	T	Y	V	Y	T	S	R	W	N	T	V	A	V	V	S	D	G	S	A	V	L	G	L	G	N	I	G	P	Y	G	A
Template Known Secondary structure											T	.		S						S		S											S	T	T	T												G	G	G					S	G	G	G	G								S	T	T	B	T	T	T	B	S
Template Predicted Secondary structure												.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	V	M	E	G	K	G	V	L	F	K	K	F	A	G	I	D	V	F	D	I	E	V	D	E	L	D	P	D	K	F	I	E	V	V	A	A	L	E	P	T	F	G	G	I	N	L	E	D	I	K	A	P	E	C	F	Y	I	E	Q	K	L	R	E	R	M	N	I	P	V	F	H	D	D	Q	H	G	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	P	V	X	E	G	K	A	F	L	F	K	A	F	A	D	I	D	A	F	P	I	C	L	S	E	S	E	E	E	K	I	I	S	I	V	K	S	L	E	P	S	F	G	G	I	N	L	E	D	I	G	A	P	K	C	F	R	I	L	Q	R	L	S	E	E	X	N	I	P	V	F	H	D	D	Q	Q	G	T	A
Template Known Secondary structure																										S														T	G	G	G		S						S			T	T														S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		I	I	S	T	A	A	I	L	N	G	L	R	V	V	E	K	N	I	S	D	V	R	M	V	V	S	G	A	G	A	A	A	I	A	C	M	N	L	L	V	A	L	G	L	Q	K	H	N	I	V	V	C	D	S	K	G	V	I	Y	Q	G	R	E	P	N	.	M	A	E	T	K	A	A	Y	A	V	V	D	D	G
Query Conservation																																																																			.
Alig confidence																																														.	.																				.
Template Conservation																																														.	.
Template Sequence		V	V	V	S	A	A	F	L	N	A	L	K	L	T	E	K	K	I	E	E	V	K	V	V	V	N	G	I	G	A	A	G	Y	N	I	V	K	F	L	L	D	L	G	V	.	.	K	N	V	V	A	V	D	R	K	G	I	L	N	E	N	D	P	E	T	C	L	N	E	Y	H	L	E	I	A	R	I	T	N	P
Template Known Secondary structure																T			G	G	G									S														T		.	.	S							T	T					T	T	S	G	G	G		S	S									T	S		T
Template Predicted Secondary structure																																														.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		247	.				.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence		K	R	.	.	.	T	L	D	D	V	I	E	G	A	D	I	F	L	G	C	S	G	P	K	V	L	T	Q	E	M	V	K	K	M	A	R	A	P	M	I	L	A	L	A	N	P	E	P	E	I	L	P	P	L	A	K	E	V	R	P	D	A	I	I	C	T	G	R	S	D	Y	P	N	Q	V	N	N	V	L	C
Query Conservation				.	.	.
Alig confidence				.	.	.																																																			.
Template Conservation																																																									.
Template Sequence		E	R	L	S	G	D	L	E	T	A	L	E	G	A	D	F	F	I	G	V	S	R	G	N	I	L	K	P	E	W	I	K	K	X	S	R	K	P	V	I	F	A	L	A	N	P	V	P	E	I	D	P	E	L	A	.	R	E	A	G	A	F	I	V	A	T	G	R	S	D	H	P	N	Q	V	N	N	L	L	A
Template Known Secondary structure		T				S							T	T		S						S		S	S		S						T	T	S		S	S								S	S	S		S	S						.			T	T		S					S		T	T	S	S	S	B			G	G	G	T
Template Predicted Secondary structure																																																									.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	F	I	F	R	G	A	L	D	V	G	A	T	A	I	N	E	E	M	K	L	A	A	V	R	A	I	A	E	L	A	H	A	E	Q	S	E	V	V	A	S	A	Y	G	D	Q	D	L	S	F	G	P	E	Y	I	I	P	K	P	F	D	P	R	L	I	V	K	I	A	P	A	V	A	K	A	A
Query Conservation
Alig confidence																.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	P	G	I	X	K	G	A	V	E	K	R	S	K	.	I	T	K	N	X	L	L	S	A	V	E	A	I	A	R	S	C	E	P	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	I	I	P	E	A	F	D	X	K	V	H	L	N	V	Y	T	A	V	K	G	S	A
Template Known Secondary structure														S		.																T	S			B	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	B	S	S			T	T															T
Template Predicted Secondary structure																.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.		.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.																		.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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