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Job DescriptionP76558
Confidence100.00%DateThu Jan 5 12:24:36 GMT 2012
Rank6Aligned Residues370
% Identity28%Templatec1qr6A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:malic enzyme 2; PDBTitle: human mitochondrial nad(p)-dependent malic enzyme
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33......40........ .50........ .60...... ...70.........80.........90.....
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Query Sequence  RDLALAYSPGVAAPCL. . . EIEKDPLKAY. KYTARGNL. . . . . . . . . . . . . VAVISNGTAVLGLGNIGALAGKPVMEGKG
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Template Sequence  SLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGV. YGXGIPVGKL
Template Known Secondary structure  STTTTTS

S

SGGGTT
T
S
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SS
BTTTB

GG.GGG
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   106...110.........120.........130.........140.........150.........160.........170.... .....180....
 
   96...100..... ....110..... ....120.........130.........140.....
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Query Sequence  VLFKKFAGID. . . . . . . VFDIEVDELD. . . . . . . . . . . . . . . . . . . . . . . PDKFIEVVAALEPTFGGINLEDIKAPECFY
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Template Sequence  CLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFR
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GGGS




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S
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   185....190.........200.........210.........220.........230.........240.........250.........260....
 
   146...150.........160.........170.........180.........190.........200.........210.. .....
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Query Sequence  IEQKLRERMNIPVFHDDQHGTAIISTAAILNGLRVVEKNISDVRMVVSGAGAAAIACMNLLVALGLQ. . . . . . . . KHNIV
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Template Sequence  FLRKYREK. . YCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVXSXVENGLSEQEAQKKIW
Template Known Secondary structure  TTT..SSTTTTTT

S
GGG



STTT

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   265....270.. .......280.........290.........300.........310.........320.........330.........340..
 
   218.220.........230.........240....... ..250..... ....260..... ....270........ .280.........
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Query Sequence  VCDSKGVIYQGREPNMAETKAAYAVVDDGK. . RTLDDVIE. . GADIFLGCSG. PKVLTQEMVKKMA. . . RAPMILALANP
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Template Sequence  XFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNP
Template Known Secondary structure  TT
BTT
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TTTGGG
B


SS

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   343......350.........360.........370.........380.........390.........400.........410.........420..
 
   290 ......... 300.........310 .........320.........330.........340.........350.....
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Query Sequence  E. . PEILPPLAK. EVRPDAIICTG. . . . . . . . . . . RSDYPNQVNNVLCFPFIFRGALDVGATAINEEMKLAAVRAIAELA
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Template Sequence  TAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQL
Template Known Secondary structure  GGGSSS
TTTS
SSS




TT





GGGTTT




TT
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   423......430.........440.........450.........460.........470.........480.........490.........500..
 
   356...360.........370.........380....... ..390.........400........ .410.........
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Query Sequence  HAEQSEVVASAYGDQDLSFGPEYIIPKPFDPR. LIVKIAPAVAKAAMESGVATR. . PIADFDVYIDK
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Template Sequence  TDE. . . . . . . . . . . . . . ELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPEDKAKYVKE
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GGGTT




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   503.. ....510.........520.........530.........540.........550.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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