Return to main results Retrieve Phyre Job Id

Job DescriptionP27294
Confidence99.92%DateWed Jan 25 15:20:46 GMT 2012
Rank11Aligned Residues147
% Identity12%Templatec3soaA_
PDB info PDB header:transferase/transferase inhibitorChain: A: PDB Molecule:calcium/calmodulin-dependent protein kinase type ii subunit PDBTitle: full-length human camkii
Resolution3.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30.........40.........50.........60.........70.........80.........90........
Predicted Secondary structure 





























Query SS confidence 















































































Query Sequence  DWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEW
Query Conservation          



   
 

   
  



                    

   
  
    
                 
Alig confidence 
































....




































......
Template Conservation   
     

 
 
  
     

   


 
  ....             

 

  
 




          ......
Template Sequence  EYQLFEELGKGSVVRRCVKVLAGQEYAAMIINT. . . . KKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEG. . . . . .
Template Known Secondary structure 

TTTTS....
S


BTTB


SS......
Template Predicted Secondary structure 





....











......
Template SS confidence 















































































   12.......20.........30.........40.... .....50.........60.........70.........80.
 
   99100.........110.........120.........130.........140.........150.........160...... ...170.......
Predicted Secondary structure 



























.



Query SS confidence 



































































.










Query Sequence  RALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCCYVRHIYVKTEGN. AEAGFLDLEKS
Query Conservation     

 
 
 
      
        
       
   
  

  

  








 



   
 .  
 


    
Alig confidence 






















...









































.










Template Conservation     

 
   

 
         ...  
     
  


  
  

   







 



        


 


 
Template Sequence  HHYLIFDLVTGGELFEDIVAREY. . . YSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLA
Template Known Secondary structure 


B

B
S
...

TT
B



SSTTSBSSTT




SS
Template Predicted Secondary structure 










...



























Template SS confidence 















































































   84.....90.........100...... ...110.........120.........130.........140.........150.........160
 
   178
Predicted Secondary structure 
Query SS confidence 
Query Sequence  R
Query Conservation 
Alig confidence 
Template Conservation   
Template Sequence  I
Template Known Secondary structure  B
Template Predicted Secondary structure 
Template SS confidence 
   161
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions