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Job DescriptionP27294
Confidence99.32%DateWed Jan 25 15:20:46 GMT 2012
Rank264Aligned Residues168
% Identity18%Templatec3lzhA_
PDB info PDB header:transferaseChain: A: PDB Molecule:aph(2")-id/aph(2")-iva; PDBTitle: crystal structure of aminoglycoside phosphotransferase aph(2")-2 id/aph(2")-iva
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40.........50.........60.........70......... 80.........90.........100....
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Query Sequence  YRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERA. GVIVPKIVFGEAVKIEGEWRALLVT
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Template Sequence  SGEGNDCIAYEI. . . NGNFIFKFPKHSRA. . . . . . . . SINLLNEVTVLKTIHNELSLPIPEVVFTGXPSEXCQXS. FAGF
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SS...TTTSS........TT
SSS







SS
S
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   28.30......... 40.........50... ......60.........70.........80.........90. ....
 
   105....110.........120.........130.........140......
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Query Sequence  EDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  TKIKGVPLTPLLLKN. . . . . LPKQSQDQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGHQX
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TTS
GGGB

TTTTS
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   96...100.........110 .........120.........130.........140.........150.........160.........170
 
   147..150.........160.........170.........180.........190.........200......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . INRQHGCCYVRHIYVKTEGNAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADW
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Template Sequence  KKVDDFYRDILDNEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDP. . . . . DNDFISLXEDDEEYGXEFV
Template Known Secondary structure  T
GGGT




SS
SGGGTTTT


TT

T.....TTTB
TTTSB
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   171........180.........190.........200.........210.........220...... ...230.........240.....
 
   207..210.....
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Query Sequence  EQVKAYYYA
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Template Sequence  SKILNHYKH
Template Known Secondary structure  TT
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   246...250....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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