Job Description P0A8Z7 Confidence 99.93% Date Thu Jan 5 11:09:02 GMT 2012 Rank 4 Aligned Residues 186 % Identity 15% Template c2y6vB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:peroxisomal membrane protein lpx1; PDBTitle: peroxisomal alpha-beta-hydrolase lpx1 (yor084w) from2 saccharomyces cerevisiae (crystal form i) Resolution 2.83 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.						.	.	.	.	.	.	40	.	.	.	.	.	.																	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																																		.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	T	L	L	Y	L	H	G	F	N	S	S	P	R	S	A	K	A	S	L	L	K	N	W	L	A	E	H	H	P	D	V	.	.	.	.	.	E	M	I	I	P	Q	L	P	P	Y	P	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	E	L	L	E	S	I	V	L	E	H	G	G
Query Conservation																																		.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.														.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.
Template Sequence		L	N	L	V	F	L	H	G	S	G	M	S	K	V	V	W	E	.	.	Y	Y	L	P	R	L	V	A	A	D	A	E	G	N	Y	A	I	D	K	V	L	L	I	D	Q	V	N	H	G	D	S	A	V	R	N	R	G	R	L	G	T	N	F	N	W	I	D	G	A	R	D	V	L	K	I	A	T	E	L	G	S
Template Known Secondary structure										T	T			G	G	G	G	G	.	.	G	G	G	G	G	S					T	T	T													T	T	S							T	T	T	T	B		S
Template Predicted Secondary structure																			.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		61						.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure			.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	.	.	.	.	.	S	L	G	I	V	G	S	S	L	G	G	Y	Y	A	T	W	L	S	Q	C	F	M	L	P	A	V	V	V	N	P	A	V	R	P	F	E	L	L	T	D	Y	L	G	Q	N	E	N	P	Y	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation			.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	D	S	H	P	A	L	N	V	V	I	G	H	S	M	G	G	F	Q	A	L	A	C	D	V	L	Q	P	N	L	F	H	L	L	I	L	I	E	P	V	V	I	T	R	K	A	I	P	P	D	S	P	Q	I	P	E	N	L	Y	N	S	L	R	L	K	T	D	H	F	A	N	E	S	E	Y	V	K	Y	M	R
Template Known Secondary structure		G	G	G		S									T														T	T	S		S						S				S							T	T															T					S	S
Template Predicted Secondary structure
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
				112	.	.	.	.	.	.	.	120	.	.	.	.	.																															.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.
Predicted Secondary structure		.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Query SS confidence		.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Query Sequence		.	.	G	Q	Q	Y	V	L	E	S	R	H	I	Y	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	M	Q	I	D	P	L	E	A	P	D	L	I	W	L	L	Q	Q	T	G	D	E	V	L	D	.	.	Y	R	Q	A	V	A
Query Conservation		.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Alig confidence		.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Conservation
Template Sequence		N	G	S	F	F	T	N	A	H	S	Q	I	L	Q	N	I	I	D	F	E	R	T	K	G	P	V	R	T	K	M	E	Q	A	Q	N	L	L	C	Y	M	N	M	Q	T	F	A	P	F	L	I	S	N	V	K	F	V	R	K	R	T	I	H	I	V	G	A	R	S	N	W	P	P	Q	N	Q	L	F	L	Q	K
Template Known Secondary structure			T	S	S		T	T	S																					S	S								T	T	S		G	G	G	T						T	T	G	G	G			S								T	T
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		Y	Y	A	S	C	R	Q	T	V	I	E	G	G	N	H	A	F	.	.	T	G	F	E	D	Y	F	N	P	I	V	D	F	L	G
Query Conservation																			.	.
Alig confidence																			.	.
Template Conservation
Template Sequence		T	L	Q	N	Y	H	L	D	V	I	P	G	G	S	H	L	V	N	V	E	A	P	D	L	V	I	E	R	I	N	H	H	I	H
Template Known Secondary structure				S	S							T	T			T	T					S
Template Predicted Secondary structure
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions