Job Description P0A8Z7 Confidence 99.83% Date Thu Jan 5 11:09:02 GMT 2012 Rank 82 Aligned Residues 186 % Identity 15% Template c1xfdD_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:dipeptidyl aminopeptidase-like protein 6; PDBTitle: structure of a human a-type potassium channel accelerating factor2 dppx, a member of the dipeptidyl aminopeptidase family Resolution 3.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.				.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.																				.	.	.	.	.	50	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Query SS confidence														.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Query Sequence		S	T	L	L	Y	L	H	G	F	N	S	S	.	.	.	P	R	S	A	K	A	S	L	L	K	N	W	L	A	E	H	H	P	D	V	E	M	I	I	P	Q	L	P	P	Y	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	A	A	E	L	L	E	S	I	V	L	E	.	.
Query Conservation														.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Alig confidence														.	.	.																			.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation																																			.	.
Template Sequence		P	L	L	L	V	V	D	G	T	P	G	S	Q	S	V	A	E	K	F	E	V	S	W	E	T	V	M	V	S	S	H	G	A	.	.	V	V	V	K	C	D	G	R	G	S	G	F	Q	G	T	K	L	L	H	E	V	R	R	R	L	G	L	L	E	E	K	D	Q	M	E	A	V	R	T	M	L	K	E	Q	Y
Template Known Secondary structure											T	T											S								T	T			.	.								T	T		S	S	S							T	T	T	T		T	T	T															S	S	S	S
Template Predicted Secondary structure																																			.	.
Template SS confidence
		623	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.			.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.					.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																										.	.	.	.
Query SS confidence																										.	.	.	.
Query Sequence		H	G	G	D	S	L	G	I	V	G	S	S	L	G	G	Y	Y	A	T	W	L	S	Q	C	.	.	.	.	F	M	L	P	A	V	V	V	N	P	A	V	R	P	F	E	L	L	T	D	Y	L	G	Q	N	E	N	P	Y	T	G	Q	Q	Y	V	L	E	S	R	H	I	Y	D	L	K	V	M	Q	I	D	P	L
Query Conservation																										.	.	.	.
Alig confidence																										.	.	.	.																		.	.
Template Conservation																																															.	.
Template Sequence		I	D	R	T	R	V	A	V	F	G	K	D	Y	G	G	Y	L	S	T	Y	I	L	P	A	K	G	E	N	Q	G	Q	T	F	T	C	G	S	A	L	S	P	I	T	D	F	.	.	K	L	Y	A	S	A	F	S	E	R	Y	L	G	L	H	G	L	D	N	R	A	Y	E	M	T	K	V	A	H	R	V	S	A
Template Known Secondary structure													T													S	S	S	T	T					S						S					T	.	.	T	S	S	B												S	S			S	S	T	T	T	S		T					T	S
Template Predicted Secondary structure																																															.	.
Template SS confidence
		701	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.			.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.								160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.				.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																												.	.	.	.	.	.	.																				.	.	.
Query SS confidence																												.	.	.	.	.	.	.																				.	.	.
Query Sequence		E	A	P	D	L	I	W	L	L	Q	Q	T	G	D	E	V	L	D	Y	R	Q	A	V	A	Y	Y	.	.	.	.	.	.	.	A	S	C	R	Q	T	V	I	E	G	G	N	H	A	F	T	G	F	E	.	.	.	D	Y	F	N	P	I	V	D	F	L	G	L	H
Query Conservation																												.	.	.	.	.	.	.																				.	.	.
Alig confidence																												.	.	.	.	.	.	.																				.	.	.
Template Conservation
Template Sequence		L	E	E	Q	Q	F	L	I	I	H	P	T	A	D	E	K	I	H	F	Q	H	T	A	E	L	I	T	Q	L	I	R	G	K	A	N	Y	S	L	Q	I	Y	P	D	E	S	H	Y	F	T	S	S	S	L	K	Q	H	L	Y	R	S	I	I	N	F	F	V	E	C
Template Known Secondary structure				S									T	T		S	S	S															T	T									T	T			S	S																			T	T	T
Template Predicted Secondary structure
Template SS confidence
		779	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions