Job Description P31548 Confidence 95.45% Date Thu Jan 5 11:48:08 GMT 2012 Rank 362 Aligned Residues 141 % Identity 18% Template c3kx2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:pre-mrna-splicing factor atp-dependent rna PDBTitle: crystal structure of prp43p in complex with adp Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.
Query SS confidence																											.	.	.
Query Sequence		V	E	R	G	E	Q	V	A	I	L	G	P	S	G	A	G	K	S	T	L	L	N	L	I	A	.	.	.	G	F	L	T	P	A	S	G	S	L	T	I	D	G	V	D	H	T	T	M	P	P	S	R	R	P	V	S	M	L	F	Q	E	N	N	L	F	S	H	L	T	V	A	Q	N	I	G	L	G	L	N	P
Query Conservation																											.	.	.
Alig confidence																											.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	Q	N	N	Q	I	M	V	F	V	G	E	T	G	S	G	K	T	T	Q	I	P	Q	F	V	L	F	D	E	M	P	H	L	E	N	T	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	C
Template Known Secondary structure						S								T	T	S	S															G	G	G	G	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.																																									.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.																	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Query Sequence		G	L	K	L	N	A	V	Q	Q	G	K	M	H	A	I	A	R	Q	M	G	I	D	N	L	M	A	R	L	P	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	G	G	Q	R	Q	R	V	A	L	A	R	C	L	V	R	E	Q	P	I	L	L	L	D	E	P	.	F	S	A	L	D
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Alig confidence																								.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation																								.	.
Template Sequence		T	Q	P	R	R	V	A	A	M	S	V	A	Q	R	V	A	E	E	M	D	V	K	.	.	L	G	E	E	V	G	Y	S	I	R	F	E	N	K	T	S	N	K	T	I	L	K	Y	M	T	D	G	M	L	L	R	E	A	M	E	D	H	D	L	S	R	Y	S	C	I	I	L	D	E	A	H	E	R	T	L	A
Template Known Secondary structure				S																T	T			.	.	B	T	T	T						T	T						T	T																			T	T		T	T									G	G	G
Template Predicted Secondary structure																								.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	L	R	Q	E	M	L	T	L	V	S	T	S	C	Q	Q	Q	K	M	T	L	L	M	V	S	H	S	V	E	D	A	A	R	I	A	T	R	S	V	V	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	D	I	L	M	G	L	L	K	Q	V	V	K	R	R	P	D	L	K	I	I	I	M	S	A	T	L	D	A	E	K	F	Q	R	Y	F	N	D	A	P	L	L	A
Template Known Secondary structure																	T	T								S	S	S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions