Job Description P31548 Confidence 100.00% Date Thu Jan 5 11:48:08 GMT 2012 Rank 14 Aligned Residues 219 % Identity 32% Template c3g5uB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding Resolution 3.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.						.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.
Predicted Secondary structure														.	.	.	.	.																																																									.	.
Query SS confidence														.	.	.	.	.																																																									.	.
Query Sequence		L	K	L	T	D	I	T	W	L	Y	H	H	.	.	.	.	.	L	P	M	R	F	S	L	T	V	E	R	G	E	Q	V	A	I	L	G	P	S	G	A	G	K	S	T	L	L	N	L	I	A	G	F	L	T	P	A	S	G	S	L	T	I	D	G	V	D	H	T	T	M	P	P	S	.	.	R	R	P	V	S
Query Conservation														.	.	.	.	.																																																									.	.
Alig confidence														.	.	.	.	.																																																									.	.
Template Conservation
Template Sequence		V	Q	F	S	G	V	V	F	N	Y	P	T	R	P	S	I	P	V	L	Q	G	L	S	L	E	V	K	K	G	Q	T	L	A	L	V	G	S	S	G	C	G	K	S	T	V	V	Q	L	L	E	R	F	Y	D	P	M	A	G	S	V	F	L	D	G	K	E	I	K	Q	L	N	V	Q	W	L	R	A	Q	L	G
Template Known Secondary structure												S		G	G	G			S			S							S	S	S							S	S	S	T	T									T	T	S	S			S						S	S	S	S		B	T	S	S						T	T	S
Template Predicted Secondary structure
Template SS confidence
		1031	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.												.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	L	F	Q	E	N	N	L	F	S	H	L	T	V	A	Q	N	I	G	L	G	L	N	P	G	L	K	L	N	A	V	Q	Q	G	K	M	H	A	I	A	R	Q	M	G	I	D	N	L	M	A	R	L	P	G	.	.	.	.	.	.	.	.	.	.	.	E	L	S	G	G	Q	R	Q	R	V	A	L	A	R	C
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.																		.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.																		.	.	.	.
Template Sequence		I	V	S	Q	E	P	I	L	F	D	C	.	S	I	A	E	N	I	A	Y	G	D	N	S	R	V	V	S	Y	.	.	.	.	E	E	I	V	R	A	A	K	E	A	N	I	H	Q	F	I	D	S	L	P	D	K	Y	N	T	R	V	G	D	K	G	T	Q	L	S	G	G	Q	K	Q	R	I	A	I	A	R	A
Template Known Secondary structure					S	S					S	S	.	B						T				S	S						.	.	.	.											T						S	S	T	T	T	G	G	G		B		S	T	T	S		S	S
Template Predicted Secondary structure													.																		.	.	.	.
Template SS confidence
		1111	.	.	.	.	.	.	.	.	1120	.		.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.					.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	R	E	Q	P	I	L	L	L	D	E	P	F	S	A	L	D	P	A	L	R	Q	E	M	L	T	L	V	S	T	S	C	Q	Q	Q	K	M	T	L	L	M	V	S	H	S	V	E	D	A	A	R	I	A	T	R	S	V	V	V	A	D	G	R	I	A	W	Q	G	M	T	N	E	L	L	S	G	K	A	S
Query Conservation
Alig confidence																																				.	.																.
Template Conservation																																				.	.																.
Template Sequence		L	V	R	Q	P	H	I	L	L	L	D	E	A	T	S	A	L	D	T	E	S	E	K	V	V	Q	E	A	L	D	K	A	R	E	.	.	G	R	T	C	I	V	I	A	H	R	L	S	T	I	Q	.	N	A	D	L	I	V	V	I	Q	N	G	K	V	K	E	H	G	T	H	Q	Q	L	L	A	Q	K	G	I
Template Known Secondary structure							S	S					S		S	S	S																	S	S	.	.	S	S							S		T	T	G	G	G	.	S		S							T	B														S		S
Template Predicted Secondary structure																																				.	.																.
Template SS confidence
		1186	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.			1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.		.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.
		224	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	A	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	F	S	M	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		1263	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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