Job Description P31548 Confidence 98.66% Date Thu Jan 5 11:48:08 GMT 2012 Rank 91 Aligned Residues 123 % Identity 23% Template c2o8dB_ PDB info PDB header:dna binding protein/dna Chain: B: PDB Molecule:dna mismatch repair protein msh6; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g du mispair Resolution 3.00 Å

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		14	.	.	.	.	.	20	.							.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.										.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.
Query Sequence		L	P	M	R	F	S	L	T	.	.	.	.	.	.	V	E	R	G	E	Q	V	A	I	L	G	P	S	G	A	G	K	S	T	L	L	N	L	I	A	G	F	.	.	.	.	.	.	.	.	.	L	T	P	A	S	G	S	L	T	I	D	G	V	D	H	T	T	M	P	P	S	R	R	P	V	S	M	L	F	Q
Query Conservation										.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	P	N	D	I	L	I	G	C	E	E	E	E	Q	E	N	K	A	Y	C	V	L	V	T	G	P	N	M	G	G	K	S	T	L	M	R	Q	A	G	L	L	A	V	M	A	Q	M	G	C	Y	V	P	A	E	V	C	R	L	T	P	I	D	R	V	F	T	R	L	G	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													S	T	T										B			T	T	S	S																T	T	T			B	S	S	S								S	B							.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1109	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.			.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.
Query SS confidence																																																																					.	.
Query Sequence		E	N	N	L	F	S	H	L	T	V	A	Q	N	I	G	L	G	L	N	P	G	L	K	L	N	A	V	Q	Q	G	K	M	H	A	I	A	R	Q	M	G	I	D	N	L	M	A	R	L	P	G	E	L	S	G	G	Q	R	Q	R	V	A	L	A	R	C	L	V	.	.	R	E	Q	P	I	L	L	L	D	E	P
Query Conservation																																																																					.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	F	F	V	E	L	S	E	T	A	S	I	L	M	H	A	T	A	H	S	L	V	L	V	D	E	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T	T								S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																						1188	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		F	S	A	L	D	P	A	L	R	Q	E	M	L	T	L	V	S	T	S	C	Q	Q	Q	.	K	M	T	L	L	M	V	S	H	S	V	E	D	A	A	R	I	A	T	R
Query Conservation																									.
Alig confidence																									.
Template Conservation
Template Sequence		G	R	G	T	A	T	F	D	G	T	A	I	A	N	A	V	V	K	E	L	A	E	T	I	K	C	R	T	L	F	S	T	H	Y	H	S	L	V	E	D	Y	S	Q	N
Template Known Secondary structure			T	T	S																			T	S																	T	S	S
Template Predicted Secondary structure
Template SS confidence
		1216	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions