Job Description P31548 Confidence 97.92% Date Thu Jan 5 11:48:08 GMT 2012 Rank 113 Aligned Residues 146 % Identity 14% Template c2cvhB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:dna repair and recombination protein radb; PDBTitle: crystal structure of the radb recombinase Resolution 2.20 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	R	G	E	Q	V	A	I	L	G	P	S	G	A	G	K	S	T	L	L	N	L	I	A	G	F	L	T	P	A	S	G	S	L	T	I	D	G	V	D	H	T	T	M	P	P	S	R	R	P	V	S	M	L	F	Q	E	N	N	L	F	S	H	L	T	V	A	Q	N	I	G	L	G	L	N	P	G	L	K
Query Conservation
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.
Template Sequence		F	A	P	G	V	L	T	Q	V	Y	G	P	Y	A	S	G	K	T	T	L	A	L	Q	T	G	L	L	S	G	K	K	V	A	Y	V	D	T	E	G	G	F	S	P	E	R	L	V	Q	M	A	E	.	.	.	.	.	.	.	.	.	.	T	R	G	L	N	P	E	E	A	L	S	R	F	I	L	F	T	P	S
Template Known Secondary structure		B		T	T	S							S	T	T	S	S														S							S	S	S													.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.											.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160									.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.
Query Sequence		L	N	A	V	Q	Q	G	K	M	H	A	I	A	R	Q	M	G	I	D	N	L	M	A	R	L	P	G	E	L	S	G	G	Q	R	Q	R	V	A	L	A	R	C	L	V	R	E	Q	P	I	L	L	L	D	E	P	F	S	A	L	.	.	.	.	.	.	.	.	D	P	A	L	R	Q	E	M	L	T	L	V	S
Query Conservation																																																													.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	F	K	E	Q	R	R	V	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	K	K	T	V	D	S	N	F	A	L	V	V	V	D	S	I	T	A	H	Y	R	A	E	E	N	R	S	G	L	I	A	E	L	S	R	Q	L	Q	V	L	L
Template Known Secondary structure		S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T										S		S	B	T	T	B
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.																												.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.														.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	S	C	Q	Q	Q	K	M	T	L	L	M	V	S	H	S	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	A	R	I	A	T	R	S	V	V	V	A
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	I	A	R	K	H	N	I	P	V	I	V	I	N	Q	V	H	F	D	S	R	T	E	M	T	K	P	V	A	E	Q	T	L	G	Y	R	C	K	D	I	L	R	L	D
Template Known Secondary structure								T									S	S	S	S			S	S				S	S		S	T	T						S
Template Predicted Secondary structure
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions