Job Description P76269 Confidence 100.00% Date Thu Jan 5 12:21:24 GMT 2012 Rank 3 Aligned Residues 407 % Identity 10% Template c3o7pA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Resolution 3.20 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	Y	G	A	I	L	T	I	V	I	G	I	S	M	A	V	L	D	G	A	I	A	N	V	A	L	P	T	I	A	T	D	L	H	A	T	P	A	S	S	I	W	V	V	N	A	Y	Q	I	A	I	V	I	S	L	L	S	F	S	F	L	G	D	M	F	G	Y	R	R	I	Y	K	C	G	L	V	V	F	L
Query Conservation
Alig confidence																.	.	.
Template Conservation																.	.	.
Template Sequence		R	S	Y	I	I	P	F	A	L	L	C	S	L	F	.	.	.	F	L	W	A	V	A	N	N	L	N	D	I	L	L	P	Q	F	Q	Q	A	F	F	Q	A	G	L	I	Q	S	A	F	Y	F	G	Y	F	I	I	P	I	P	A	G	I	L	M	K	K	L	S	Y	K	A	G	I	I	T	G	L	F	L	Y	A
Template Known Secondary structure			T	T	T											.	.	.																			T	T			T	T													T	T											S
Template Predicted Secondary structure																.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.				.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		93	.	.	.	.	.	.	100	.				.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		L	S	S	L	F	C	A	L	S	.	.	.	D	S	L	Q	M	L	T	L	A	R	V	I	Q	G	F	G	G	A	A	L	M	S	V	N	T	A	L	I	R	L	I	Y	P	Q	R	F	L	G	R	G	M	G	I	N	S	F	I	V	A	V	S	S	A	A	G	P	T	I	A	A	A	I	L	S	I	A	S	W
Query Conservation											.	.	.
Alig confidence											.	.	.
Template Conservation
Template Sequence		L	G	A	A	L	F	W	P	A	A	E	I	M	N	Y	T	L	F	L	V	G	L	F	I	I	A	A	G	L	G	C	L	E	T	A	A	N	P	F	V	T	V	L	G	P	E	S	S	G	H	F	R	L	N	L	A	Q	T	F	A	S	F	G	A	I	I	A	V	V	F	G	Q	S	L	I	L	S	N	V	P
Template Known Secondary structure						T							T	T																														S	S		G	G	G																										T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	W	L	F	L	I	N	V	P	L	G	I	I	A	L	L	L	A	M	R	F	L	P	P	N	G	S	R	A	S	K	P	R	F	D	L	P	S	A	V	M	N	A	L	T	F	G	L	L	I	T	A	L	S	G	F	A	Q	G	Q	S	L	T	L	I	A	A	E	L	V	V	M	V	V	V	G	I	F	F	I
Query Conservation
Alig confidence																																																																																.	.
Template Conservation																																																																																.	.
Template Sequence		H	Q	S	Q	D	V	L	D	K	M	S	P	E	Q	L	S	A	Y	K	H	S	L	V	L	S	V	Q	T	P	Y	M	I	I	V	A	I	V	L	L	V	A	L	L	I	M	L	T	K	F	P	A	L	Q	S	D	N	H	S	D	A	K	Q	G	S	F	S	A	S	L	S	R	L	A	R	I	R	H	W	.	.
Template Known Secondary structure											S																	T	T																			S						T	T	T					S	S	T	T	S															.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	Q	L	S	L	P	V	P	L	L	P	V	D	L	L	R	I	P	L	F	S	L	S	I	C	T	S	V	C	S	F	C	A	Q	M	L	A	M	V	S	L	P	F	Y	L	Q	T	V	L	G	R	S	E	V	E	T	G	L	L	L	T	P	W	P	L	A	T	M	V	M	A	P	L	A	G	Y	L	I	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	W	A	V	L	A	Q	F	C	Y	V	G	A	Q	T	A	C	W	S	Y	L	I	R	Y	A	V	E	E	I	P	G	M	T	A	G	F	A	A	N	Y	L	T	G	T	M	V	C	F	F	I	G	R	F	T	G	T	W	L	I	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																						261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	H	A	G	L	L	G	A	L	G	L	F	I	M	A	A	G	L	F	S	L	V	L	L	P	A	S	P	A	D	I	N	I	I	W	P	M	I	L	C	G	A	G	F	G	L	F	Q	S	P	N	N	H	T	I	I	T	S	A	P	R	E	R	S	G	G	A	S	G	M	L	G	T	A	R	L	L	G	Q
Query Conservation
Alig confidence																										.	.	.	.																																								.	.
Template Conservation																										.	.	.	.																																								.	.
Template Sequence		R	F	A	P	H	K	V	L	A	A	Y	A	L	I	A	M	A	L	C	L	I	S	A	F	.	.	.	.	A	G	G	H	V	G	L	I	A	L	T	L	C	S	A	F	M	S	I	Q	Y	P	T	I	F	S	L	G	I	K	N	L	G	Q	D	T	K	Y	G	.	.	S	S	F	I	V	M	T	I	I	G	G
Template Known Secondary structure			S																							.	.	.	.	S																	T	T											S	S		G	G	G					.	.							G	G	G
Template Predicted Secondary structure																										.	.	.	.																																								.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.					.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.			.	.	.	.	.	.	390	.	.	.	.
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	G	A	A	L	V	A	L	M	L	N	Q	F	G	D	N	G	T	H	V	S	L	M	A	A	A	I	L	A	V	I	A	A	C	V	S	G	L	R	I	T	Q	P
Query Conservation
Alig confidence																				.	.	.
Template Conservation																				.	.	.
Template Sequence		G	I	V	T	P	V	M	G	F	V	S	D	A	A	G	N	I	P	.	.	.	T	A	E	L	I	P	A	L	C	F	A	V	I	F	I	F	A	R	F	R	S	Q	T
Template Known Secondary structure																T	S	S	G	.	.	.	G	G	G															T	S
Template Predicted Secondary structure																				.	.	.
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.				.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.