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Job DescriptionP76269
Confidence100.00%DateThu Jan 5 12:21:24 GMT 2012
Rank5Aligned Residues430
% Identity12%Templatec2xutC_
PDB info PDB header:transport proteinChain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter.
Resolution3.62 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30.........40...... ...50.........60.........70........ .80.........90.
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Query Sequence  LTIVIGISMAVLDGAIANVALPTIATDL. . . . . . HATPASSIWVVNAYQIAIVISLLSFSFLGDMF. GYRRIYKCGLVVF
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Template Conservation   
      
 
  

    
   
                   
               
 



  


          
Template Sequence  YIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIY
Template Known Secondary structure  S
SS

SSSTTTTTTTTSS
S
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   16...20.........30.........40.........50.........60.........70.........80.........90.....
 
   92.......100. ........110.........120.........130.........140 .........150.........160.......
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Query Sequence  LLSSLFCALS. DSLQMLTLARVIQGFGGAALMSVNTALIRLIYPQRFLGR. . . GMGINSFIVAVSSAAGPTIAAAILSIA
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Template Sequence  CVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF
Template Known Secondary structure  TSS
TTT
STTTTTTSTTS
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   96...100.........110.........120.........130.........140.........150.........160.........170.....
 
   168.170.........180.........190.........200.........210.........220.........230.........240.......
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Query Sequence  SWKWLFLINVPLGIIALLLAMRFLPPNGSRASKPRFDLPSAVMNALTFGLLITALSGFAQGQSLTLIAAELVVMVVVGIF
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Template Sequence  GAAVAFGIPGVLMFVATVFFWLGRKRYIHMPVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAG
Template Known Secondary structure 
SSSSS





TTTGGGTTTT
SSTG
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   176...180.........190.........200.........210.........220.........230.........240.........250.....
 
   248.250.........260.........270.........280.........290.........300.........310.........320.......
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Query Sequence  FIRRQLSLPVPLLPVDLLRIPLFSLSICTSVCSFCAQMLAMVSLPFYLQTVLGRSEVETGLLLTPWPLATMVMAPLAGYL
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Template Sequence  ASLQLERARKSHPDAAVDGVRSVLRILVL. FALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPF
Template Known Secondary structure  GGTS

S

SSSSTTTTT.TTSTTTSSTTTS


SSS
TTSGGGGGG
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   276...280.........290.........300.... .....310.........320.........330.........340.........350....
 
   328.330.........340.........350.... .....360.........370.........380.........390.........400.
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Query Sequence  IERVHAGLLGALGLFIMAAGLFSLVLL. . . . . . PASPADINIIWPMILCGAGFGLFQSPNNHTIITSAPRERSGGASGML
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Template Conservation                                                     
                
   
    
  
Template Sequence  NNFVTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFW
Template Known Secondary structure  TTT


TTTTTTTTTTTTT



STTT

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   355....360.........370.........380.........390.........400.........410.........420.........430....
 
   402.......410.........420.........430.........440.........
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Query Sequence  GTARLLGQSSGAALVALMLNQFGDNGTHVSLMAAAILAVIAACVSGLR
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Template Sequence  TLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAIL
Template Known Secondary structure  GGGTTS
S
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   447..450.........460.........470.........480.........490....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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