Job Description Q46863 Confidence 100.00% Date Thu Jan 5 12:35:20 GMT 2012 Rank 4 Aligned Residues 488 % Identity 24% Template d1dpea_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.00

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																															.											.																																					.	.	.
Query SS confidence																															.											.																																					.	.	.
Query Sequence		Q	V	F	R	Y	N	N	H	S	D	P	G	T	L	D	P	Q	K	V	E	E	N	T	A	A	Q	I	V	L	.	D	L	F	E	G	L	V	W	M	D	.	G	E	G	Q	V	Q	P	A	Q	A	E	R	W	E	I	L	D	G	G	K	R	Y	I	F	H	L	R	S	G	L	Q	W	S	D	G	Q	.	.	.
Query Conservation																															.											.																																					.	.	.
Alig confidence																															.											.																																					.	.	.
Template Conservation
Template Sequence		K	T	L	V	Y	C	S	E	G	S	P	E	G	F	N	P	Q	L	F	I	S	G	T	T	Y	D	A	S	S	V	P	L	Y	N	R	L	V	E	F	K	I	G	T	T	E	V	I	P	G	L	A	E	K	W	E	V	S	E	D	G	K	T	Y	T	F	H	L	R	K	G	V	K	W	H	D	N	K	E	F	K
Template Known Secondary structure									S	S			S		S		G	G	G										T								S					T	T	S	S					S	S								T	T	S									S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
					108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	P	L	T	A	E	D	F	V	L	G	W	Q	R	A	V	D	P	K	T	A	S	P	F	A	G	Y	L	A	Q	A	H	I	N	N	A	A	A	I	V	A	G	K	A	D	V	T	S	L	G	V	K	A	T	D	D	R	T	L	E	V	T	L	E	Q	P	V	P	W	F	T	T	M	L	A	W	P	T
Query Conservation		.	.	.
Alig confidence		.	.	.																																								.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.
Template Sequence		P	T	R	E	L	N	A	D	D	V	V	F	S	F	D	R	Q	K	N	A	Q	N	P	Y	H	K	V	S	G	G	S	Y	E	Y	F	E	G	M	G	L	P	E	.	.	.	.	.	.	L	I	S	E	V	K	K	V	D	D	N	T	V	Q	F	V	L	T	R	P	E	A	P	F	L	A	D	L	A	M	D	F
Template Known Secondary structure			S	S																	T	T	S	T	T	T	T	G	G	G									T	T				.	.	.	.	.	.										T	T							S	S			T	T					T	T	S	G	G
Template Predicted Secondary structure																																												.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.							.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.				.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		L	F	P	V	P	H	H	V	I	A	K	.	.	.	H	G	D	S	W	S	K	P	E	N	M	V	Y	N	G	A	F	V	L	D	Q	W	V	V	N	E	K	I	T	A	R	K	N	P	K	Y	R	D	A	Q	H	T	V	L	Q	Q	V	E	Y	L	A	L	D	N	S	V	T	G	Y	N	R	Y	R	A	G	E
Query Conservation													.	.	.
Alig confidence													.	.	.																																						.
Template Conservation																																																					.
Template Sequence		A	S	I	L	S	K	E	Y	A	D	A	M	M	K	A	G	T	P	E	K	L	D	L	N	P	I	G	T	G	P	F	Q	L	Q	Q	Y	Q	K	D	S	R	I	R	Y	K	A	F	D	G	Y	W	.	G	T	K	P	Q	I	D	T	L	V	F	S	I	T	P	D	A	S	V	R	Y	A	K	L	Q	K	N	E
Template Known Secondary structure		G														T	T		T	T					S				S	S	S								T	T	T								T	T		S	.	S				S		S																			T	T	S
Template Predicted Secondary structure																																																					.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		262	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.																																																													.
Query SS confidence							.																																																													.
Query Sequence		V	D	L	T	W	.	V	P	A	Q	Q	I	P	A	I	E	K	S	L	P	G	E	L	R	I	I	P	R	L	N	S	E	Y	Y	N	F	N	L	E	K	P	P	F	N	D	V	R	V	R	R	A	L	Y	L	T	V	D	R	Q	L	I	A	Q	K	V	L	.	G	L	R	T	P	A	T	T	L	T	P	P	E
Query Conservation							.																																																													.
Alig confidence							.																																																													.
Template Conservation
Template Sequence		C	Q	V	M	P	Y	P	N	P	A	D	I	A	R	M	K	Q	D	K	S	I	N	L	M	E	M	P	G	L	N	V	G	Y	L	S	Y	N	V	Q	K	K	P	L	D	D	V	K	V	R	Q	A	L	T	Y	A	V	N	K	D	A	I	I	K	A	V	Y	Q	G	A	G	V	S	A	K	N	L	I	P	P	T
Template Known Secondary structure			S	B		S	S			G	G	G								T	T									S									T	T	S	T	T	T	T	S										T	S											T	T	S					S	S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.			.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		V	K	G	F	S	A	T	T	F	D	E	L	Q	K	P	M	S	E	R	V	A	M	A	K	A	L	L	K	Q	A	G	Y	D	A	S	H	P	L	R	F	E	L	F	.	.	Y	N	K	Y	D	L	H	E	K	T	A	I	A	L	S	S	E	W	K	K	W	L	G	A	Q	V	T	L	R	T	M	E	W	K	T
Query Conservation																																													.	.
Alig confidence						.	.	.	.	.																																			.	.
Template Conservation						.	.	.	.	.
Template Sequence		M	W	G	Y	.	.	.	.	.	N	D	D	V	Q	D	Y	T	Y	D	P	E	K	A	K	A	L	L	K	E	A	G	L	E	K	G	F	S	I	D	L	W	A	M	P	V	Q	R	P	Y	N	P	N	A	R	R	M	A	E	M	I	Q	A	D	W	A	K	V	G	V	Q	A	K	I	V	T	Y	E	W	G	E
Template Known Secondary structure		S	T	T		.	.	.	.	.		T	T																		T	T		T	T										S	S		B	T	T	B	S															T	T	T
Template Predicted Secondary structure						.	.	.	.	.
Template SS confidence
		314	.	.	.						.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450					.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
Predicted Secondary structure																																			.	.	.	.
Query SS confidence																																			.	.	.	.
Query Sequence		Y	L	D	A	R	R	A	G	D	F	M	L	S	R	Q	S	W	D	A	T	Y	N	D	A	S	S	F	L	N	T	L	K	S	.	.	.	.	D	S	E	E	N	V	G	H	W	K	N	A	Q	Y	D	A	L	L	N	Q	A	T	Q	I	T	D	A	T	K	R	N	A	L	Y	Q	Q	A	E	V	I	I	N	Q
Query Conservation																																			.	.	.	.
Alig confidence																																			.	.	.	.
Template Conservation
Template Sequence		Y	L	K	R	A	K	D	G	E	H	Q	T	V	M	M	G	W	T	G	D	N	G	D	P	D	N	F	F	A	T	E	F	S	C	A	A	S	E	Q	G	S	N	Y	S	K	W	C	Y	K	P	F	E	D	L	I	Q	P	A	R	A	T	D	D	H	N	K	R	V	E	L	Y	K	Q	A	Q	V	V	M	H	D
Template Known Secondary structure								T	T			S									S	S	S		T									S							T			T	T
Template Predicted Secondary structure
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
		494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	P	L	I	P	I	Y	Y	Q	P	L	I	K	L	L	K	P	Y	V	G	G	F	P	L	H	N	P	Q	D	Y	V	Y	S	K	E	L	Y	I	K
Query Conservation
Alig confidence																													.
Template Conservation																													.
Template Sequence		Q	A	P	A	L	I	I	A	H	S	T	V	F	E	P	V	R	K	E	V	K	G	Y	V	V	D	P	.	L	G	K	H	H	F	E	N	V	S	I	E
Template Known Secondary structure				S															T	T			S					T	.	T	S					T	T
Template Predicted Secondary structure																													.
Template SS confidence
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.		.	.	.	.	500	.	.	.	.	.	.	.