Job Description Q46863 Confidence 100.00% Date Thu Jan 5 12:35:20 GMT 2012 Rank 10 Aligned Residues 463 % Identity 20% Template c3t66A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nickel abc transporter (nickel-binding protein); PDBTitle: crystal structure of nickel abc transporter from bacillus halodurans Resolution 2.80 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		Q	Q	V	F	R	Y	N	N	H	S	D	P	G	T	L	D	P	Q	K	V	E	E	N	T	A	A	Q	I	V	L	D	L	F	E	G	L	V	W	M	D	G	E	G	.	Q	V	Q	P	A	Q	A	E	R	W	E	I	L	D	G	G	K	R	Y	I	F	H	L	R	S	G	L	Q	W	S	D	G	Q	P	L	T
Query Conservation																																													.
Alig confidence																			.	.																									.												.
Template Conservation																			.	.																																					.
Template Sequence		E	K	H	I	H	F	L	F	N	V	S	T	N	S	L	D	P	.	.	H	V	D	M	T	Y	I	P	V	R	A	G	I	T	E	T	L	V	R	V	D	E	E	N	V	T	I	A	P	W	L	A	E	S	W	D	.	S	T	D	G	Q	H	W	T	I	K	L	R	E	D	V	T	F	Q	N	G	K	E	M	D
Template Known Secondary structure										S				S				T	.	.	T	T		S	S						T	T	S		B		S					T	T	T		S				S	S						.		S	S	S	S								S	S		B		T	T	S		B
Template Predicted Secondary structure																			.	.																																					.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	D	F	V	L	G	W	Q	R	A	V	D	P	K	T	A	S	P	F	A	G	Y	L	A	Q	A	H	I	N	N	A	A	A	I	V	A	G	K	A	D	V	T	S	L	G	V	K	A	T	D	D	R	T	L	E	V	T	L	E	Q	P	V	P	W	F	T	T	M	L	A	W	P	T	L	F	P	V	P	H
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	E	A	V	K	A	S	L	E	R	A	L	D	E	S	V	A	I	E	N	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	I	D	E	I	E	A	D	G	Y	T	L	H	I	T	T	K	E	P	F	P	E	F	I	S	E	L	V	N	P	N	V	S	I	I	D	V
Template Known Secondary structure														T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T							S	S			T	T	T	G	G	G	G	G	S	G	G	G		B	B		T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110																						.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		H	V	I	A	K	H	G	D	S	W	S	K	P	E	N	M	V	Y	N	G	A	F	V	L	D	Q	W	V	V	N	E	K	I	T	A	R	K	N	P	K	Y	R	D	A	Q	H	T	V	L	Q	Q	V	E	Y	L	A	L	D	N	S	V	T	G	Y	N	R	Y	R	A	G	E	V	D	L	T	W	.	V	P	A
Query Conservation																																																																														.
Alig confidence			.	.	.	.	.	.	.																																			.																																		.
Template Conservation			.	.	.	.	.	.	.																																			.
Template Sequence		T	.	.	.	.	.	.	.	E	E	D	F	T	N	H	P	V	G	T	G	P	F	A	L	E	S	F	T	P	G	S	K	L	E	L	V	R	Y	D	E	Y	W	.	D	G	A	S	K	L	D	S	V	T	F	S	F	N	E	D	A	S	A	R	S	L	A	L	E	S	G	Q	A	D	I	V	Y	R	P	E	V
Template Known Secondary structure		T	.	.	.	.	.	.	.	S			T	T	T				B	S	S	S								T	T	T								T	T		T	.	T				S		S																			T	T	S		S				S			T
Template Predicted Secondary structure			.	.	.	.	.	.	.																																			.
Template SS confidence
		148								.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		Q	Q	I	P	A	I	E	K	S	L	P	G	E	L	R	I	I	P	R	L	N	S	E	Y	Y	N	F	N	L	E	K	P	P	F	N	D	V	R	V	R	R	A	L	Y	L	T	V	D	R	Q	L	I	A	Q	K	V	L	.	G	L	R	T	P	A	T	T	L	T	P	P	E	V	K	G	F	S	A	T	T	F
Query Conservation																																																											.
Alig confidence																																																											.																		.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		E	S	I	E	T	L	Q	A	N	E	G	I	M	V	E	A	T	E	T	F	R	T	H	N	L	T	M	N	L	D	R	D	S	L	K	D	V	N	V	R	R	A	V	D	V	L	L	D	R	Q	E	I	V	D	T	I	M	L	G	Y	A	E	V	A	D	G	P	F	I	P	T	L	P	F	A	.	.	.	.	.
Template Known Secondary structure		T	T							S	T	T									S									T	T	S	T	G	G	G	S											S									T	T	T	T	S					S	S	S	S		T	T	S	T	T		.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.								.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure																										.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.
Query Sequence		D	E	L	Q	K	P	M	S	E	R	V	A	M	A	K	A	L	L	K	Q	A	G	Y	D	.	.	.	.	.	.	.	A	S	H	P	L	R	F	E	L	F	Y	N	K	Y	D	L	H	E	K	T	A	I	A	L	S	S	E	W	K	K	W	L	G	A	Q	V	T	L	R	T	M	E	W	K	T	Y	L	D	A
Query Conservation																										.	.	.	.	.	.	.
Alig confidence		.																								.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	P	S	Y	E	K	K	E	T	G	T	D	I	A	I	Q	Y	L	E	E	A	G	Y	T	L	E	N	Q	M	Q	K	D	G	E	P	L	H	F	T	V	L	T	Y	G	S	R	A	E	L	P	L	I	A	Q	V	F	Q	S	N	A	K	Q	I	G	I	E	V	E	I	R	Q	I	E	V	P	E	E	Y	M	A
Template Known Secondary structure		.									S												T										T	T											S	S	S	T	T															T	T									S	S	S	T
Template Predicted Secondary structure		.
Template SS confidence
			295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.		.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		R	R	A	G	D	F	M	L	S	R	Q	S	W	D	A	T	Y	N	D	A	S	S	F	L	.	N	T	L	K	S	D	S	E	E	N	V	G	H	W	K	N	A	Q	Y	D	A	L	L	N	Q	A	T	Q	I	T	D	A	T	K	R	N	A	L	Y	Q	Q	A	E	V	I	I	N	Q	Q	A	P	L	I	P	I
Query Conservation																										.
Alig confidence																										.
Template Conservation
Template Sequence		S	N	R	D	W	D	L	I	T	Y	S	N	V	T	S	P	R	G	D	A	G	Y	Y	L	N	A	T	Y	H	P	T	G	A	L	N	F	S	S	V	N	D	P	E	L	T	G	I	I	D	E	L	N	R	T	V	D	Q	D	V	R	A	K	L	T	E	Q	A	A	A	Y	I	D	E	Q	K	I	H	S	F	L
Template Known Secondary structure		T		T	T										S		T	T	S											S	T	T		T	T			S																T																					T	T
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
		501	.	.	.	.	.	.	.	.	510	.	.		.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		Y	Y	Q	P	L	I	K	L	L	K	P	Y	.	V	G	G	F	P	L	H	N	P	Q	D	Y	V	Y	S	K	E	L	Y	I
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence		I	H	P	S	A	V	V	A	Y	D	E	N	K	V	K	N	W	V	T	T	R	S	E	Y	Y	M	I	T	N	Q	L	D	V
Template Known Secondary structure												T	T	T		B						S	S	S				S		T	T		B
Template Predicted Secondary structure
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.