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Job DescriptionQ46863
Confidence100.00%DateThu Jan 5 12:35:20 GMT 2012
Rank11Aligned Residues464
% Identity18%Templatec3rqtA_
PDB info PDB header:unknown functionChain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: 1.5 angstrom crystal structure of the complex of ligand binding2 component of abc-type import system from staphylococcus aureus with3 nickel and two histidines
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32.......40.........50.........60.........70.........80.........90.........100.........110.
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Query Sequence  QQVFRYNNHSDPGTLDPQKVEENTAAQIVLDLFEGLVWMDGEGQVQPAQAERWEILDGGKRYIFHLRSGLQWSDGQPLTA
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Template Sequence  GKDLNISLPLKTKSIAPYET. . . . DVPVKIGAAESLFKTNDQGKIEKALVKSYHQP. NDTTLDIELKDNIKFQNGQKLTA
Template Known Secondary structure 

SS

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B
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   5....10.........20.... .....30.........40.........50...... ...60.........70.........
 
   112.......120.........130.........140.........150.........160.........170.........180.........190.
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Query Sequence  EDFVLGWQRAVDPKTASPFAGYLAQAHINNAAAIVAGKADVTSLGVKATDDRTLEVTLEQPVPWFTTMLAWPTLFPVPHH
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Template Sequence  EKVKSSLENSXKKSDLVKYSL. . . . . . . . . . . . . . . . . . . . . PISSITAKGQKLTIKTNSAYPELVSELANPFXAIYDTD
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TTSS

TTTTSGGG
B

TT
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   80.........90.........100 .........110.........120.........130........
 
   192.......200.........210.........220.........230.........240.........250.........260...... ...270
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Query Sequence  VIAKHGDSWSKPENMVYNGAFVLDQWVVNEKITARKNPKYRDAQHTVLQQVEYLALDNSVTGYNRYRAGEVDLTW. VPAQ
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Template Sequence  . . . . . . AKSDVNQTPVGTGPYQIKDYKQSRKISLSNFKDYW. QGKPKLDHITVTYQEDGNNRVRNLESQKDDLITDVPVN
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SS
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SSSTTT
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   139140.........150.........160.........170... ......180.........190.........200.........210.
 
   271........280.........290.........300.........310.........320...... ...330.........340.........
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Query Sequence  QIPAIEKSLPGELRIIPRLNSEYYNFNLEKPPFNDVRVRRALYLTVDRQLIAQKVL. GLRTPATTLTPPEVKGFSATTFD
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Template Sequence  KVQDIENNQNLKVSKESGFRTSLLXYNHTN. KKXTKSVREALDHIIDRQGIADHIYQGYAKPATSPFNDKIPYI. . . . . .
Template Known Secondary structure  G
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   212.......220.........230.........240. ........250.........260.........270.........280....
 
   350.........360.........370.........380.........390.........400.........410.... .....420........
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Query Sequence  ELQKPMSERVAMAKALLKQAGYDASHPLRFELFYNKYDLHEKTAIALSSEWKKWLGAQVTLRTME. WKTYLDARRAGDFM
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Template Sequence  KEPKLTKQNIEQAKXLLAKDGYTKEHPLKIKLITYDGRPELSKIAQVLQSDAKKANIEIDIKSVDDIEGYLKDRSAWDAT
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TTT

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SSSTTTT
S
TT
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S
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   285....290.........300.........310.........320.........330.........340.........350.........360....
 
   429430.........440.........450.........460.........470.........480.........490.........500........
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Query Sequence  LSRQSWDATYNDASSFLNTLKSDSEENVGHWKNAQYDALLNQATQITDATKRNALYQQAEVIINQQAPLIPIYYQPLIKL
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Template Sequence  XYSFGTIPRGDTGYFFNQAYKKDGAINKGDYNNSNVDDLINQLNHTVDVKERHNISNDIIKLSSRDVPNSYIAYNDQIVA
Template Known Secondary structure  S
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TTSTT
TT
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S
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   365....370.........380.........390.........400.........410.........420.........430.........440....
 
   509510.........520.........530.....
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Query Sequence  LKPYVGGFPLHNPQDYVYSKELYIKAH
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Template Sequence  ANSKVKNYKVTPEGIYLIDYRTTIEHH
Template Known Secondary structure  TT




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   445....450.........460.........470.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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