Job Description Q46863 Confidence 100.00% Date Thu Jan 5 12:35:20 GMT 2012 Rank 2 Aligned Residues 504 % Identity 42% Template c3o9pA_ PDB info PDB header:peptide binding protein/peptide Chain: A: PDB Molecule:periplasmic murein peptide-binding protein; PDBTitle: the structure of the escherichia coli murein tripeptide binding2 protein mppa Resolution 2.07 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	Q	Q	V	F	R	Y	N	N	H	S	D	P	G	T	L	D	P	Q	K	V	E	E	N	T	A	A	Q	I	V	L	D	L	F	E	G	L	V	W	M	D	G	E	G	Q	V	Q	P	A	Q	A	E	R	W	E	I	L	D	G	G	K	R	Y	I	F	H	L	R	S	G	L	Q	W	S	D	G	Q	P	L
Query Conservation
Alig confidence																																																										.
Template Conservation																																																										.
Template Sequence		A	E	K	Q	E	L	V	R	H	I	K	D	E	P	A	S	L	D	P	A	K	A	V	G	L	P	E	I	Q	V	I	R	D	L	F	E	G	L	V	N	Q	N	E	K	G	E	I	V	P	G	V	A	T	Q	W	K	.	S	N	D	N	R	I	W	T	F	T	L	R	D	N	A	K	W	A	D	G	T	P	V
Template Known Secondary structure			S									S	S			S		S		T	T	T			S														S					T	T	S					S	S						.		S	S	S	S								T	T		B		T	T	S		B
Template Predicted Secondary structure																																																										.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	E	D	F	V	L	G	W	Q	R	A	V	D	P	K	T	A	S	P	F	A	G	Y	L	A	Q	A	H	I	N	N	A	A	A	I	V	A	G	K	A	D	V	T	S	L	G	V	K	A	T	D	D	R	T	L	E	V	T	L	E	Q	P	V	P	W	F	T	T	M	L	A	W	P	T	L	F	P	V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	Q	D	F	V	Y	S	W	Q	R	L	V	D	P	K	T	L	S	P	F	A	W	F	A	A	L	A	G	I	N	N	A	Q	A	I	I	D	G	K	A	T	P	D	Q	L	G	V	T	A	V	D	A	H	T	L	K	I	Q	L	D	K	P	L	P	W	F	V	N	L	T	A	N	F	A	F	F	P	V	Q
Template Known Secondary structure																G	G	G			T	T	T							T	B	T	T						T	T	S	S		G	G	G	S	S						T	T						B	S	S			T	T						T	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		H	H	V	I	A	K	H	G	D	S	W	S	K	P	E	N	M	V	Y	N	G	A	F	V	L	D	Q	W	V	V	N	E	K	I	T	A	R	K	N	P	K	Y	R	D	A	Q	H	T	V	L	Q	Q	V	E	Y	L	A	L	D	N	S	V	T	G	Y	N	R	Y	R	A	G	E	V	D	L	T	W	.	V	P
Query Conservation																																																																															.
Alig confidence								.																																																																							.
Template Conservation								.
Template Sequence		K	A	N	V	E	S	.	G	K	E	W	T	K	P	G	N	L	I	G	N	G	A	Y	V	L	K	E	R	V	V	N	E	K	L	V	V	V	P	N	T	H	Y	W	D	N	A	K	T	V	L	Q	K	V	T	F	L	P	I	N	Q	E	S	A	A	T	K	R	Y	L	A	G	D	I	D	I	T	E	S	F	P
Template Known Secondary structure							T	.		T	T	T	T	S	T	T	T				S	S	S								T	T	T								T	T	S	T	T	G	G	G				S																				T	S		S	B		S
Template Predicted Secondary structure								.
Template SS confidence
		169	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		A	Q	Q	I	P	A	I	E	K	S	L	P	G	E	L	R	I	I	P	R	L	N	S	E	Y	Y	N	F	N	L	E	K	P	P	F	N	D	V	R	V	R	R	A	L	Y	L	T	V	D	R	Q	L	I	A	Q	K	V	L	.	G	L	R	T	P	A	T	T	L	T	P	P	E	V	K	G	F	S	A	T	T
Query Conservation																																																												.
Alig confidence																																																												.
Template Conservation
Template Sequence		K	N	M	Y	Q	K	L	L	K	D	I	P	G	Q	V	Y	T	P	P	Q	L	G	T	Y	Y	Y	A	F	N	T	Q	K	G	P	T	A	D	Q	R	V	R	L	A	L	S	M	T	I	D	R	R	L	M	T	E	K	V	L	G	T	G	E	K	P	A	W	H	F	T	P	D	V	T	A	G	F	T	P	E	P
Template Known Secondary structure		G	G	G								S	T	T	S																T	T	S	S	G	G	G	S											S									T	T		S	S					S	S	S	S		T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	E	L	Q	K	P	M	S	E	R	V	A	M	A	K	A	L	L	K	Q	A	G	Y	D	A	S	H	P	L	R	F	E	L	F	Y	N	K	Y	D	L	H	E	K	T	A	I	A	L	S	S	E	W	K	K	W	L	G	A	Q	V	T	L	R	T	M	E	W	K	T	Y	L	D	A	R	R	A	G	D	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	P	F	E	Q	M	S	Q	E	E	L	N	A	Q	A	K	T	L	L	S	A	A	G	Y	G	P	Q	K	P	L	K	L	T	L	L	Y	N	T	S	E	N	H	Q	K	I	A	I	A	V	A	S	M	W	K	K	N	L	G	V	D	V	K	L	Q	N	Q	E	W	K	T	Y	I	D	S	R	N	T	G	N	F
Template Known Secondary structure							S																	T		B	T	T	B										S																																					T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	S	R	Q	S	W	D	A	T	Y	N	D	A	S	S	F	L	N	T	L	K	S	D	S	E	E	N	V	G	H	W	K	N	A	Q	Y	D	A	L	L	N	Q	A	T	Q	I	T	D	A	T	K	R	N	A	L	Y	Q	Q	A	E	V	I	I	N	Q	Q	A	P	L	I	P	I	Y	Y	Q	P	L	I	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	V	I	R	A	S	W	V	G	D	Y	N	E	P	S	T	F	L	T	L	L	T	S	T	H	S	G	N	I	S	R	F	N	N	P	A	Y	D	K	V	L	A	Q	A	S	T	E	N	T	V	K	A	R	N	A	D	Y	N	A	A	E	K	I	L	M	E	Q	A	P	I	A	P	I	Y	Q	Y	T	N	G	R
Template Known Secondary structure		S									S	S	S	S	T					G	G	G	S	T	T		T	T		T	T															T	T			S																				S
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	K	P	Y	V	G	G	F	P	L	H	N	P	Q	D	Y	V	Y	S	K	E	L	Y	I	K	A	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	K	P	W	L	K	G	Y	P	I	N	N	P	E	D	V	A	Y	S	R	T	M	Y	I	V	K	H
Template Known Secondary structure			B		T	T						T	T		T	T					G	G	G				B
Template Predicted Secondary structure
Template SS confidence
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.