Job Description Q46863 Confidence 100.00% Date Thu Jan 5 12:35:20 GMT 2012 Rank 7 Aligned Residues 490 % Identity 23% Template c3m8uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:heme-binding protein a; PDBTitle: crystal structure of glutathione-binding protein a (gbpa) from2 haemophilus parasuis sh0165 in complex with glutathione disulfide3 (gssg) Resolution 1.85 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.																.
Query SS confidence																													.																.
Query Sequence		Q	Q	V	F	R	Y	N	N	H	S	D	P	G	T	L	D	P	Q	K	V	E	E	N	T	A	A	Q	.	I	V	L	D	L	F	E	G	L	V	W	M	D	G	E	.	G	Q	V	Q	P	A	Q	A	E	R	W	E	I	L	D	G	G	K	R	Y	I	F	H	L	R	S	G	L	Q	W	S	D	G	Q	P	L
Query Conservation																													.																.
Alig confidence																													.																.
Template Conservation
Template Sequence		D	K	T	F	I	N	C	V	S	R	S	P	T	G	F	S	P	A	L	V	M	D	G	I	S	Y	N	A	S	S	Q	Q	V	Y	N	R	L	V	E	F	K	R	G	S	T	D	I	E	P	A	L	A	E	S	W	T	V	S	D	D	G	L	T	Y	T	F	N	L	R	K	G	V	K	F	H	S	N	K	E	F
Template Known Secondary structure										S	S			S		S		G	G	G										T								S					T	T	S	S					S	S								T	T	S									S	S						B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		110							.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure			.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.
Query Sequence		T	.	.	.	.	.	.	A	E	D	F	V	L	G	W	Q	R	A	V	D	P	K	T	A	S	P	F	A	G	Y	L	A	Q	A	H	I	N	N	A	A	A	I	V	A	G	K	A	D	V	T	S	L	G	V	K	A	T	D	D	R	T	L	E	V	T	L	E	Q	P	V	P	W	F	T	T	M	L	A	W	P
Query Conservation			.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.																										.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.
Template Sequence		T	P	S	R	D	F	N	A	D	D	V	V	F	S	F	Q	R	Q	L	D	P	N	H	P	Y	H	N	V	S	K	A	T	.	.	.	.	.	.	Y	P	Y	F	K	A	M	K	F	S	T	L	L	K	S	V	E	K	V	D	M	H	T	V	K	I	T	L	N	R	Q	D	A	T	F	L	A	S	L	G	M	D
Template Known Secondary structure				S	S																	T	T	S	T	T	T	T	G	G	G			.	.	.	.	.	.							T	T													T	T							S	S			T	T					T	T	S	G
Template Predicted Secondary structure																																		.	.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.							.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.				.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		T	L	F	P	V	P	H	H	V	I	A	.	.	.	K	H	G	D	S	W	S	K	P	E	N	M	V	Y	N	G	A	F	V	L	D	Q	W	V	V	N	E	K	I	T	A	R	K	N	P	K	Y	R	D	A	Q	H	T	V	L	Q	Q	V	E	Y	L	A	L	D	N	S	V	T	G	Y	N	R	Y	R	A	G
Query Conservation													.	.	.
Alig confidence													.	.	.																																							.
Template Conservation																																																						.
Template Sequence		F	I	S	I	Y	S	A	E	Y	A	D	K	M	L	A	A	G	K	P	E	T	I	D	T	T	P	I	G	T	G	P	F	L	F	A	G	Y	Q	V	D	Q	K	S	R	Y	L	A	H	K	E	Y	W	.	K	G	K	A	D	I	D	R	L	I	F	E	I	V	P	D	A	T	A	R	Y	A	K	L	Q	A	G
Template Known Secondary structure		G	G														T	T		T	T					S				S	S	S								T	T	T								T	T		T	.	T				S		S																				T
Template Predicted Secondary structure																																																						.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		261	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure								.																																																													.
Query SS confidence								.																																																													.
Query Sequence		E	V	D	L	T	W	.	V	P	A	Q	Q	I	P	A	I	E	K	S	L	P	G	E	L	R	I	I	P	R	L	N	S	E	Y	Y	N	F	N	L	E	K	P	P	F	N	D	V	R	V	R	R	A	L	Y	L	T	V	D	R	Q	L	I	A	Q	K	V	L	.	G	L	R	T	P	A	T	T	L	T	P	P
Query Conservation								.																																																													.
Alig confidence								.																																																													.
Template Conservation
Template Sequence		A	C	D	L	I	D	F	P	N	A	A	D	L	E	K	M	K	T	D	P	K	V	N	L	H	S	Q	S	G	L	N	I	A	Y	I	A	F	N	T	E	K	A	P	F	D	N	V	K	V	R	Q	A	L	N	Y	A	V	D	K	N	A	I	I	D	A	V	Y	R	G	A	G	V	A	A	K	N	P	L	P	P
Template Known Secondary structure		S		S			S	S										T	S		T	T									S									T	T	S	T	T	T	T	S										T										T	T	T	T	S					S	S	S	S		T
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.			.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		E	V	K	G	F	S	A	T	T	F	D	E	L	Q	K	P	M	S	E	R	V	A	M	A	K	A	L	L	K	Q	A	G	Y	D	A	S	H	.	.	P	L	R	F	E	L	F	Y	N	K	Y	D	L	H	E	K	T	A	I	A	L	S	S	E	W	K	K	W	L	G	A	Q	V	T	L	R	T	M	E	W	K
Query Conservation																																							.	.
Alig confidence							.	.	.	.	.																												.	.
Template Conservation							.	.	.	.	.
Template Sequence		T	I	W	G	Y	.	.	.	.	.	N	N	E	I	T	G	Y	E	Y	S	P	E	K	A	K	Q	L	L	K	E	A	G	F	E	N	G	F	E	T	D	I	W	V	Q	P	V	V	R	A	S	N	P	N	P	R	R	M	A	E	L	V	Q	S	D	W	E	K	V	G	V	K	S	K	L	V	S	Y	E	W	G
Template Known Secondary structure		T	S	T	T		.	.	.	.	.		T	T																		T	T		T	T										S	S		B	T	T	B	S															T	T	T
Template Predicted Secondary structure							.	.	.	.	.
Template SS confidence
		337	.	.	340	.						.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.				.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
Predicted Secondary structure																																		.	.	.
Query SS confidence																																		.	.	.
Query Sequence		T	Y	L	D	A	R	R	A	G	D	F	M	L	S	R	Q	S	W	D	A	T	Y	N	D	A	S	S	F	L	N	T	L	.	.	.	K	S	D	S	E	E	N	V	G	H	W	K	N	A	Q	Y	D	A	L	L	N	Q	A	T	Q	I	T	D	A	T	K	R	N	A	L	Y	Q	Q	A	E	V	I	I	N	Q
Query Conservation																																		.	.	.
Alig confidence																																		.	.	.
Template Conservation
Template Sequence		D	Y	I	K	R	T	K	A	G	E	L	T	A	G	T	Y	G	W	S	G	D	N	G	D	P	D	N	F	L	S	P	L	F	G	S	E	N	V	G	N	S	N	Y	A	R	F	K	N	P	E	L	D	A	L	L	H	K	A	V	G	L	S	D	K	A	E	R	A	K	I	Y	E	Q	A	Q	V	L	L	K	E
Template Known Secondary structure									T	T			S									S	S	S		T										G	G	G	B	T	T	T	B	T	T																T		S
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
		494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	P	L	I	P	I	Y	Y	Q	P	L	I	K	L	L	K	P	Y	V	G	G	F	P	L	H	N	P	Q	D	Y	V	Y	S	K	E	L	Y	I	K	A
Query Conservation
Alig confidence																													.
Template Conservation																													.
Template Sequence		Q	A	P	W	I	N	V	A	H	S	I	N	F	A	P	T	S	K	R	V	Q	D	Y	K	Q	S	P	.	F	G	Y	T	Y	L	Y	G	T	K	L	A	D
Template Known Secondary structure				S															T	T			S					T	.	T	S					T	T
Template Predicted Secondary structure																													.
Template SS confidence
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.		.	520	.	.	.	.	.	.	.	.	.	530	.