Job Description Q46863 Confidence 100.00% Date Thu Jan 5 12:35:20 GMT 2012 Rank 19 Aligned Residues 215 % Identity 19% Template c3lvuB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding protein; PDBTitle: crystal structure of abc transporter, periplasmic substrate-binding2 protein spo2066 from silicibacter pomeroyi Resolution 1.79 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	N	S	E	Y	Y	N	F	N	L	E	K	P	P	F	N	D	V	R	V	R	R	A	L	Y	L	T	V	D	R	Q	L	I	A	Q	K	V	L	.	G	L	R	T	P	A	T	T	L	T	P	P	E	V	K	G	F	S	A	T	T	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																									.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	A	G	X	T	G	F	V	I	N	T	R	R	A	P	F	D	D	W	R	L	R	E	A	L	L	L	A	F	N	F	E	F	I	N	D	T	V	T	G	G	V	X	P	R	I	T	S	Y	F	S	G	T	D	L	A	Y	R	P	G	T	A	S	G	R	E	A	E	L	L	A	P	F	A	A	D	L	P	P	G
Template Known Secondary structure												T	T	S	T	T	T	T	S																						T	T		S					S	T	T	T	T	S	T	T	S			S	S	S										G	G	G	T	T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
												350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.										.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	E	L	Q	K	P	M	S	E	R	V	A	M	A	K	A	L	L	K	Q	A	G	Y	.	.	.	.	.	.	.	.	.	D	A	S	H	P	L	R	F	E	L	F	Y	N	K	Y	D	L	H	E	K	T	A	I	A	L	S	S	E	W	K	K	W	L	G	A	Q	V	T	L
Query Conservation		.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	E	G	Y	A	L	P	Q	G	D	G	T	A	R	N	R	T	N	L	R	R	A	A	Q	F	L	E	Q	A	G	F	R	I	E	Q	G	Q	L	L	G	P	D	G	A	P	L	A	L	R	F	L	L	R	Q	G	D	S	D	X	Q	T	V	L	E	I	Y	T	R	A	L	E	R	L	G	I	A	A	Q	I
Template Known Secondary structure													S	S	S	S															T	T					T	T					T	T	S	S	B									T	T																		T	T
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.						.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.
Query SS confidence																																														.	.	.	.	.
Query Sequence		R	T	M	E	W	K	T	Y	L	D	A	R	R	A	G	D	F	M	L	S	R	Q	S	W	D	A	T	Y	N	D	A	S	S	F	L	N	T	L	K	S	D	S	E	E	.	.	.	.	.	N	V	G	H	W	K	N	A	Q	Y	D	A	L	L	N	Q	A	T	Q	I	T	D	A	T	K	R	N	A	L	Y	Q
Query Conservation																																														.	.	.	.	.
Alig confidence																																														.	.	.	.	.
Template Conservation
Template Sequence		E	K	V	D	N	A	Q	Y	T	A	R	V	A	E	L	D	F	D	L	T	P	F	R	R	D	L	S	L	S	P	G	N	E	Q	R	L	Y	W	G	S	H	S	A	G	Q	P	G	T	R	N	L	X	G	A	A	S	P	A	I	D	A	X	I	D	R	X	L	A	A	T	T	E	D	E	L	T	A	A	T	R
Template Known Secondary structure															T	T			S										S	S			T								G	G	G	T	T		T	T		S		T	T																			S
Template Predicted Secondary structure
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	E	V	I	I	N	Q	Q	A	P	L	I	P	I	Y	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	D	R	V	L	T	A	G	R	Y	V	I	P	I	W	R
Template Known Secondary structure										T	T
Template Predicted Secondary structure
Template SS confidence
		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions