Job Description Q46863 Confidence 100.00% Date Thu Jan 5 12:35:20 GMT 2012 Rank 16 Aligned Residues 472 % Identity 17% Template c2grvC_ PDB info PDB header:biosynthetic protein Chain: C: PDB Molecule:lpqw; PDBTitle: crystal structure of lpqw Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.									.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																								.	.																						.	.	.	.	.	.	.	.													.
Query SS confidence																								.	.																						.	.	.	.	.	.	.	.													.
Query Sequence		Q	Q	V	F	R	Y	N	N	H	S	D	P	G	T	L	D	P	Q	K	V	E	E	.	.	N	T	A	A	Q	I	V	L	D	L	F	E	G	L	V	W	M	D	G	E	G	.	.	.	.	.	.	.	.	Q	V	Q	P	A	Q	A	E	R	W	E	I	.	L	D	G	G	K	R	Y	I	F	H	L	R	S	G
Query Conservation																								.	.																						.	.	.	.	.	.	.	.													.
Alig confidence																								.	.																						.	.	.	.	.	.	.	.													.
Template Conservation
Template Sequence		P	T	Q	I	I	M	A	I	D	S	I	G	P	G	F	N	P	H	L	L	S	D	Q	S	P	V	N	A	A	I	A	S	L	V	L	P	S	S	F	R	P	V	P	D	P	T	S	P	T	G	S	R	W	E	L	D	T	T	L	L	E	S	A	E	V	T	Q	E	N	P	F	T	V	T	Y	K	I	R	P	E
Template Known Secondary structure										S				S		S		T	T	B	G	G	G		S											S			S							T	T	S	T	T	S							T	T	T									T	T	T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		L	Q	W	S	D	G	Q	P	L	T	A	E	D	F	V	L	G	W	Q	R	A	V	D	P	K	T	A	S	P	F	A	G	Y	L	A	Q	A	H	I	N	N	A	A	A	I	V	A	G	K	A	D	V	T	S	L	G	V	K	A	T	.	D	D	R	T	L	E	V	T	L	E	Q	P	V	P	W	F	T	T	M
Query Conservation																																																														.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Q	W	T	D	N	A	P	I	A	A	D	D	Y	W	Y	L	W	R	Q	M	V	S	Q	P	G	V	V	D	P	A	G	Y	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	G	V	Q	S	V	E	G	G	K	Q	A	V	V	T	F	S	Q	P	Y	P	A	W	R	E	L
Template Known Secondary structure			B		T	T	S		B																	T	T	B	S			T	T	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	T	T							S	S			T	T	G	G	G	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140																			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.				.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																					.	.	.																							.
Query SS confidence																					.	.	.																							.
Query Sequence		L	A	W	P	T	L	F	P	V	P	H	H	V	I	A	K	H	G	D	.	.	.	S	W	S	K	P	E	N	M	V	Y	N	G	A	F	V	L	D	Q	W	V	V	N	.	E	K	I	T	A	R	K	N	P	K	Y	R	D	A	Q	H	T	V	L	Q	Q	V	E	Y	L	A	L	D	N	S	V	T	G	Y	N
Query Conservation																					.	.	.																							.
Alig confidence					.	.	.	.													.	.	.																							.													.
Template Conservation					.	.	.	.																																																			.
Template Sequence		F	N	D	.	.	.	.	I	L	P	A	H	I	V	K	D	I	P	G	G	F	G	A	G	L	A	R	A	M	P	V	T	G	G	Q	F	R	V	E	T	I	D	P	Q	R	D	E	I	L	L	A	R	N	D	R	F	W	.	S	V	P	A	K	P	D	L	V	L	F	R	R	G	G	A	P	A	A	L	A	D
Template Known Secondary structure		S		S	.	.	.	.								T	T	S	T	T					T	T	S	S				S			S	S								T	T	T	T								T	T		S	.	S	S			S		S									S
Template Predicted Secondary structure					.	.	.	.																																																			.
Template SS confidence
		168	.	170					.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		256	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.					.
Predicted Secondary structure													.	.																																																															.	.	.	.
Query SS confidence													.	.																																																															.	.	.	.
Query Sequence		R	Y	R	A	G	E	V	D	L	T	W	.	.	V	P	A	Q	Q	I	P	A	I	E	K	S	L	P	G	E	L	R	I	I	P	R	L	N	S	E	Y	Y	N	F	N	L	E	K	P	P	F	N	D	V	R	V	R	R	A	L	Y	L	T	V	D	R	Q	L	I	A	Q	K	V	L	G	L	.	.	.	.	R
Query Conservation													.	.																																																															.	.	.	.
Alig confidence													.	.																																																															.	.	.	.
Template Conservation
Template Sequence		S	I	R	N	G	D	T	Q	V	A	Q	V	H	G	G	A	A	T	F	A	Q	L	S	A	I	P	D	V	R	T	A	R	I	V	T	P	R	V	M	Q	L	T	L	R	A	Q	Q	P	K	L	A	D	P	Q	V	R	K	A	I	L	G	L	I	D	V	D	L	L	A	S	V	G	A	G	D	D	N	T	V	T
Template Known Secondary structure						T	S																		T	S	T	T																		T	T	S	G	G	G		S											S												S	S	S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.											.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.
Query Sequence		T	P	A	T	T	L	T	P	P	E	V	K	G	F	S	A	T	T	F	D	E	L	Q	K	P	M	S	E	R	V	A	M	A	K	A	L	L	K	Q	A	G	Y	.	.	.	.	.	.	.	.	.	.	D	A	S	H	P	L	R	F	E	L	F	Y	N	K	Y	D	L	H	E	K	T	A	I	A	L	S	S	E
Query Conservation																																												.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.
Template Sequence		L	A	Q	A	Q	V	R	S	P	S	D	P	G	Y	.	.	.	.	.	.	V	P	T	A	P	P	A	M	T	R	D	D	A	L	E	L	L	R	D	A	G	Y	V	S	E	P	V	R	E	R	I	V	K	D	G	V	P	L	T	I	V	L	G	V	A	S	N	D	P	T	S	V	A	V	A	N	T	A	A	D
Template Known Secondary structure						S	S	S		T	T	S	T	T		.	.	.	.	.	.																				T	T													T	T											T	T
Template Predicted Secondary structure																.	.	.	.	.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.							.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.		.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450					.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure																								.																														.	.	.	.
Query SS confidence																								.																														.	.	.	.
Query Sequence		W	K	K	W	L	G	A	Q	V	T	L	R	T	M	E	W	K	T	Y	L	D	A	.	R	R	A	G	D	F	M	L	S	R	Q	S	W	D	A	T	Y	N	D	A	S	S	F	L	N	T	L	K	S	.	.	.	.	D	S	E	E	N	V	G	H	W	K	N	A	Q	Y	D	A	L	L	N	Q	A	T	Q	I
Query Conservation																								.																														.	.	.	.
Alig confidence																								.											.																			.	.	.	.
Template Conservation																																			.
Template Sequence		Q	L	R	N	V	G	I	D	A	S	V	L	A	L	D	P	V	A	L	Y	G	D	A	L	V	N	N	R	V	D	A	V	V	.	G	W	R	Q	A	G	G	D	L	A	T	V	L	A	S	R	Y	G	C	R	A	L	Q	A	P	S	N	I	T	G	I	C	D	R	S	I	Q	P	R	I	D	A	A	L	D	G
Template Known Secondary structure						T	T																T	T	T	T	T	T			S				.						S	S												S	T	T					S		T	T	S				G	G	G									T	T
Template Predicted Secondary structure																																			.
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.		.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.		.	.	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		T	D	A	T	K	R	N	A	L	Y	Q	Q	A	E	V	I	I	N	Q	Q	A	P	L	I	P	I	Y	Y	Q	P	L	I	K	L	L	K	P	Y	V	G	G	F	P	L	H	N	P	Q	D	Y	V	Y	S	K	E	L	Y	.	I	K	A	H
Query Conservation																																																											.
Alig confidence				.	.																																																						.
Template Conservation				.	.
Template Sequence		T	D	.	.	D	I	A	D	V	I	Q	A	V	E	P	R	L	W	N	M	A	T	V	L	P	I	L	Q	D	T	T	I	V	A	A	G	P	S	V	Q	N	V	S	L	T	G	A	V	P	V	G	I	V	G	D	A	G	D	W	T	K	T
Template Known Secondary structure		S	S	.	.																T																	T	T			S			S				T	T	T		S		T	T	G	G	G
Template Predicted Secondary structure				.	.
Template SS confidence
		540	.			.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.