Job Description P0ADN2 Confidence 9.60% Date Thu Jan 5 11:21:25 GMT 2012 Rank 30 Aligned Residues 62 % Identity 8% Template c3d9oB_ PDB info PDB header:transcription Chain: B: PDB Molecule:rna-binding protein 16; PDBTitle: snapshots of the rna processing factor scaf8 bound to different2 phosphorylated forms of the carboxy-terminal domain of rna-polymerase3 ii Resolution 2.00 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		Q	L	L	E	R	H	G	Y	A	F	N	E	L	D	L	G	K	R	E	P	V	T	E	E	E	K	L	F	V	.	A	V	C	R	G	E	R	E	P	V	T	E	A	E	R	V	W	S	K	Y	M	T	R	I	K	R	P	K	R	F	H	T	L	S
Query Conservation																															.
Alig confidence															.																.
Template Conservation															.
Template Sequence		E	A	V	K	T	F	N	S	E	L	Y	S	L	.	X	D	X	K	P	P	I	S	K	A	K	X	T	Q	I	T	K	A	A	I	K	A	I	K	F	Y	K	H	V	V	Q	S	V	E	K	F	I	Q	K	C	K	P	E	Y	K	V	P	G	L	Y
Template Known Secondary structure													G	G	.	G	G	S		S	S																T	G	G	G															S		G	G	G
Template Predicted Secondary structure															.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions