Job Description P0AEZ3 Confidence 98.99% Date Thu Jan 5 11:24:41 GMT 2012 Rank 51 Aligned Residues 126 % Identity 18% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	I	I	V	V	T	S	G	K	G	G	V	G	K	T	T	S	S	A	A	I	A	T	G	L	A	Q	K	G	K	K	T	V	V	I	D	F	D	I	G	L	R	N	L	D	L	I	M	G	C	E	R	R	V	V	Y	D	F	V	N	V	I	Q	G	D	A	T	L	N	Q	A	L	I	K	D	K	R	T	E
Query Conservation
Alig confidence									.																																				.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.																																				.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	F	I	I	M	L	V	.	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	.	.	.	.	.	.	.	.	.	.	.	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S							.		S	S	S	S	S	S	T	T	T										T	T	S					B						S	S	S	.	.	.	.	.	.	.	.	.	.	.		S											T	T		.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.																																				.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.												.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.											.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		N	L	Y	I	L	P	A	S	Q	T	R	D	K	D	A	L	T	R	E	G	V	A	K	V	L	D	D	L	K	A	M	D	F	E	F	I	V	C	D	S	P	A	G	I	E	T	G	A	L	M	A	.	.	.	.	.	.	.	.	.	.	L	Y	F	A	D	E	A	I	I	T	T	N	P	E	V	.	.	S	S
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence		.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	Q	K	A
Template Known Secondary structure		.	.	.	.	.	.						S	S				T	T													T	T		S									S			S	S	T																		S								T	T	T	G	G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	D	S	D	R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	D	L	A	S	R	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions