Job Description P0AEZ3 Confidence 92.42% Date Thu Jan 5 11:24:41 GMT 2012 Rank 296 Aligned Residues 143 % Identity 17% Template c1mj1A_ PDB info PDB header:ribosome Chain: A: PDB Molecule:elongation factor tu; PDBTitle: fitting the ternary complex of ef-tu/trna/gtp and ribosomal proteins2 into a 13 a cryo-em map of the coli 70s ribosome Resolution 13.00 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	V	T	S	G	K	G	G	V	G	K	T	T	S	S	A	A	I	A	T	G	L	A	Q	K	G	K	K	T	V	V	I	D	F	D	I	G	L	R	N	L	D	L	I	M	G	C	E	R	R	V	V	Y	D	F	V	N	V	I	Q	G	D	A	T	L	N	Q	A	L	I	K	D	K	R	T	E	N	L	Y
Query Conservation
Alig confidence						.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	G	T	I	.	G	H	V	D	H	G	K	T	T	L	T	A	A	L	T	Y	V	A	A	A	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	V	E	V	K	D	Y	G	D	I	D	K	A	R	E	E	R	A	R	G	I	T	I	N	T	A	H	V	E	Y	E
Template Known Secondary structure						.		S	T	T	S	S																S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T										S		S						T	T	S			S
Template Predicted Secondary structure						.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.																						40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		I	L	P	A	S	Q	T	R	D	K	D	A	L	T	R	E	G	V	A	K	V	L	D	D	L	K	A	M	D	F	E	F	I	V	C	D	S	P	A	.	.	G	I	E	T	G	A	L	M	A	L	Y	F	A	D	E	A	I	I	T	T	N	P	E	V	S	S	V	R	D	S	D	R	I	L	G	I	L	A	S
Query Conservation																																									.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	H	Y	S	H	V	D	C	R	G	H	A	D	Y	I	K	N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	S	A	A	D	G	R	M	R	Q	T	R	E	H	I	L	L	A	R	Q
Template Known Secondary structure			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S											S	G	G	G									T	T		S	S							T	T	T		S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		72	.																											.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	R	R	A	E	N	G	E	E	P	I	K	E	H	L	L	L	T	R	Y	N	P	G	R	V	S	R	G	D	M	L	S	M	E	D	V	L	E	I	L
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.
Template Sequence		V	G	V	R	.	.	.	.	.	.	.	.	Y	I	V	V	F	M	N	K	V	D	M	V	D	D	R	E	L	L	D	L	V	E	M	E	V	R	D	L	L
Template Known Secondary structure		T	T			.	.	.	.	.	.	.	.									G	G	G
Template Predicted Secondary structure						.	.	.	.	.	.	.	.
Template SS confidence
		126	.	.	.									130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions