Job Description P0AEZ3 Confidence 97.78% Date Thu Jan 5 11:24:41 GMT 2012 Rank 61 Aligned Residues 161 % Identity 15% Template c1j8yF_ PDB info PDB header:signaling protein Chain: F: PDB Molecule:signal recognition 54 kda protein; PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	I	I	V	V	T	S	G	K	G	G	V	G	K	T	T	S	S	A	A	I	A	T	G	L	A	Q	K	G	K	K	T	V	V	I	D	F	D	I	G	L	R	N	L	D	L	I	M	G	C	E	R	R	V	V	Y	D	F	V	N	V	I	Q	G	D	A	T	L	N	Q	A	L	I	K	D	K	R	T	E
Query Conservation
Alig confidence													.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	Y	V	I	M	L	V	G	V	Q	G	.	.	.	.	.	T	T	A	G	K	L	A	Y	F	Y	K	K	K	G	F	K	V	G	L	V	G	A	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	P	A	A	L	E	Q	L	Q	Q	L	G	Q	Q	I	G	V	P	V	Y	G	E	P	G	E
Template Known Secondary structure		S								S			.	.	.	.	.													T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S															T							T	T
Template Predicted Secondary structure													.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.						.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.															.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.											.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.
Query Sequence		N	L	Y	I	L	P	A	S	Q	T	R	D	K	D	A	L	T	R	E	G	V	A	K	V	L	D	D	L	K	A	M	D	F	E	F	I	V	C	D	S	P	A	G	I	E	.	.	.	.	.	.	.	.	.	.	T	G	A	L	M	A	L	Y	F	A	D	E	A	I	I	T	T	N	P	E	V	S	S	V	R
Query Conservation																																															.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.																								.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																																.
Template Sequence		K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	V	G	I	A	K	R	G	V	E	K	F	L	S	E	K	M	E	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	A	A	L	L	E	E	M	K	N	I	Y	E	A	I	K	P	D	E	V	T	L	V	I	D	A	S	I	G	Q	.	K
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.																T	T		S									S			T	T																			S								G	G	G	G	G	.	G
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																																.
Template SS confidence
		163															.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	D	R	I	L	G	I	L	A	S	K	S	R	R	A	E	N	G	E	E	P	I	K	E	H	L	L	L	T	R	Y	N	P	G	R	V	S	R	G	D	M	L	S	M	E	D	V	L	E	I	L	R	I	K	L	V	G	V
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Sequence		A	Y	D	L	A	S	K	F	N	Q	A	S	K	.	.	.	.	.	.	.	.	.	.	I	G	T	I	I	I	T	K	M	D	G	T	A	K	.	.	.	.	G	G	G	A	L	S	A	V	A	A	T	G	A	T	I	K	F	I
Template Known Secondary structure														T	.	.	.	.	.	.	.	.	.	.	T								T	T	S		S		.	.	.	.										T	T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240											.	.	.	.	.	.	.	.	.	250	.	.	.	.					.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions