Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFQ5
Confidence100.00%DateThu Jan 5 11:26:58 GMT 2012
Rank3Aligned Residues124
% Identity27%Templatec3r0pB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:l-psp putative endoribonuclease; PDBTitle: crystal structure of l-psp putative endoribonuclease from uncultured2 organism
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  KSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITD
Query Conservation     
     
 
   

 

  
  





   
             
    
 

   
  

     

   


  
Alig confidence 















































































Template Conservation 
  
     
   
 

 

  
  
 



             
   
    
 

   
   
     

   


  
Template Sequence  KAIIHSDNAPAAIGTYSQAVKVNNTVYLSGQIPLDPVTMQLVEGDFAVQAHQVFKNLRAVCEAAGGGLRDIVKLNVYLTD
Template Known Secondary structure 

TTS



SS

STT
SB
TTTSSB

S
TTS
GGGS
Template Predicted Secondary structure 



































Template SS confidence 















































































   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   83......90.........100.........110.........120......
Predicted Secondary structure 













Query SS confidence 











































Query Sequence  WKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHI
Query Conservation           
    
    



 
 
  
    




 

  
Alig confidence 











































Template Conservation                
    

 
 
 
  
    




 

 
Template Sequence  LANFPIVNEVMGQYFQAPYPARAAIGINQLPRASLIEADGIMVI
Template Known Secondary structure  GGG

SS


S

GGG
S
Template Predicted Secondary structure 













Template SS confidence 











































   84.....90.........100.........110.........120.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions