Job Description P77622 Confidence 100.00% Date Thu Jan 5 12:31:12 GMT 2012 Rank 26 Aligned Residues 216 % Identity 36% Template c3g5uB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding Resolution 3.80 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		L	T	L	R	D	V	H	I	N	F	P	A	R	K	N	W	L	G	K	T	T	E	H	V	H	A	I	N	G	I	D	L	Q	I	R	R	G	E	T	L	G	I	V	G	E	S	G	C	G	K	S	T	L	A	Q	L	L	M	G	M	L	Q	P	S	H	G	Q	Y	I	R	S	G	S	Q	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.
Template Sequence		V	Q	F	S	G	V	V	F	N	Y	P	T	R	P	S	I	.	.	.	.	.	.	.	.	P	V	L	Q	G	L	S	L	E	V	K	K	G	Q	T	L	A	L	V	G	S	S	G	C	G	K	S	T	V	V	Q	L	L	E	R	F	Y	D	P	M	A	G	S	V	F	L	D	G	K	E	I	K	Q	L	N	V
Template Known Secondary structure												S		G	G	G		.	.	.	.	.	.	.	.		S			S							S	S	S							S	S	S	T	T									T	T	S	S			S						S	S	S	S		B	T	S	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.
Template SS confidence
		1031	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.									.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.
						80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.												.	.	.
Predicted Secondary structure		.	.	.	.																																																															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																																																															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	R	I	M	Q	M	V	F	Q	D	P	L	S	S	L	N	P	R	L	P	V	W	R	I	I	T	E	P	L	W	I	A	K	R	S	S	E	Q	Q	R	R	A	L	A	E	E	L	A	V	Q	V	G	I	R	P	E	Y	L	D	R	L	P	H	.	.	.	.	.	.	.	.	.	.	.	A	F	S
Query Conservation		.	.	.	.																																																															.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.												.	.					.								.	.	.	.	.																								.									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.					.								.	.	.	.	.																								.
Template Sequence		Q	W	L	R	A	Q	L	G	I	V	S	Q	E	P	I	.	.	L	F	D	C	.	S	I	A	E	N	I	A	.	.	.	.	.	Y	G	D	N	S	R	V	V	S	Y	E	E	I	V	R	A	A	K	E	A	N	I	H	.	Q	F	I	D	S	L	P	D	K	Y	N	T	R	V	G	D	K	G	T	Q	L	S
Template Known Secondary structure					T	T	S						S	S			.	.			S	S	.	B						T	.	.	.	.	.				S	S																T			.				S	S	T	T	T	G	G	G		B		S	T	T	S		S	S
Template Predicted Secondary structure																	.	.					.								.	.	.	.	.																								.
Template SS confidence
		1103	.	.	.	.	.	.	1110	.	.	.	.	.	.	.			.	.	1120	.		.	.	.	.	.	.	.						.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.		.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	Q	R	Q	R	I	A	I	A	R	A	L	S	S	Q	P	D	V	I	V	L	D	E	P	T	S	A	L	D	I	S	V	Q	A	Q	I	L	N	L	L	V	T	L	Q	E	N	H	G	L	T	Y	V	L	I	S	H	N	V	S	V	I	R	H	M	S	D	R	V	A	V	M	Y	L	G	Q	I	V	E	L
Query Conservation
Alig confidence																																																.	.																	.
Template Conservation																																																.	.																	.
Template Sequence		G	G	Q	K	Q	R	I	A	I	A	R	A	L	V	R	Q	P	H	I	L	L	L	D	E	A	T	S	A	L	D	T	E	S	E	K	V	V	Q	E	A	L	D	K	A	R	E	.	.	G	R	T	C	I	V	I	A	H	R	L	S	T	I	Q	N	.	A	D	L	I	V	V	I	Q	N	G	K	V	K	E	H
Template Known Secondary structure																			S	S					S		S	S	S																	S	S	.	.	S	S							S		T	T	G	G	G	S	.		S							T	B
Template Predicted Secondary structure																																																.	.																	.
Template SS confidence
		1174	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.			1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.		.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	A	Q	Q	V	L	T	A	P	A	H	P	Y	T	R	L	L
Query Conservation
Alig confidence											.
Template Conservation											.
Template Sequence		G	T	H	Q	Q	L	L	A	Q	.	K	G	I	Y	F	S	M	V
Template Known Secondary structure										S	.		S
Template Predicted Secondary structure											.
Template SS confidence
		1251	.	.	.	.	.	.	.	.		1260	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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