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Job DescriptionP77622
Confidence98.87%DateThu Jan 5 12:31:12 GMT 2012
Rank85Aligned Residues197
% Identity20%Templatec3auyB_
PDB info PDB header:recombinationChain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: crystal structure of rad50 bound to adp
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.. ...
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Query Sequence  MSDTLLTLRDVHINFPARKNWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQ. . . . . YIR
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Template Sequence  MS. . . MILKEIRMN. . . . . . . . . . . . . NFKSHVNSRIKFEKG. IVAIIGENGSGKSSIFEAVFFALFGAGSFNYDTIITK
Template Known Secondary structure 

................TT

S.
TTSS
S



GGGTB
T
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   1. .......10. ........20...... ...30.........40.........50.........60...
 
   76...80.........90.........100.........110.........120.........130........
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Query Sequence  SGSQRIMQMVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDR. . . . . . . . . . . . . . . . .
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Template Sequence  GKKSVYVELDFEVNGNNYKIIREYDSGRGGAKLYKNGKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSLK
Template Known Secondary structure  T
STTTTTT
S
S

TTS
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   65....70.........80.........90.........100.........110.........120.........130.........140....
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  PSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKY
Template Known Secondary structure  T

TTTTTTTTT
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   145....150.........160.........170.........180.........190.........200.........210.........220....
 
   139140.........150........ .160.........170..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LPHAFSGGQRQRIAIARALS. . . . . . . SQPDVIVLDEPTSA
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Template Sequence  VPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVY
Template Known Secondary structure  TT
S
STTTTTGGGS
SS

SSTTTT
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   872.......880.........890.........900.........910.........920.........930.........940.........950.
 
   173......180.........190.........200.........210.......
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Query Sequence  LDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMY
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Template Sequence  LDENRRAKLAEIFRKVKS. . IPQMIIITHHRE. LEDVADVIINVK
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S..SSS
GG.GGGG
S
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   952.......960......... 970.........980. ........990...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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